Clone UFO04656 Report

Search the DGRC for UFO04656

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:46
Well:56
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG31093-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04656.5prime Sequence

618 bp (277 high quality bases) assembled on 2009-06-30

> UFO04656.5prime
CAGTCGACATGAACTGCATATTTCTTATGTGCTCCCTGCTTGGCATCTCT
TTCGCTATAGTGATCGAGGCCAACTGTCTGCGGGGTACAGGCCACATGTG
GCAGCAGAAGCCACCCACCAGCACAAACAGTTGCAATCGACCGTTATCTC
TGGCTAGAAATGGAACATCAATGGGAAAACGAGCAACGTCTGCAGTCGAC
ATTCCAGTAGCTACAATGGGAGCACCACGTCCGGAGGTTGAAGCAACCTT
ACCTGCTCCTCCTGCGGTGTTTCTGGCCAACTACGTCTATGAGTGCGCCA
TTCATCGCACTGCAAACCTTGCAGCAGACCACCAGGGTCGGAGCCGGAAT
CGAAACCGGAACTTGAATCCGGACCGGAGGTGCCTAAACCCCGAACTGTG
ACACTGGCAGCCGGCAAACTGGAAGGGTTCGGGACAACTGATGCAAGATG
TCTAGAACATTCGTTTGGCCCGCGAGCCCAGGGAAGTGGACATAATCATA
AGCCTTGGTGATAGTCATAATCTGAACTAGCCTACGAGATCCTGCGCGCG
AGAGTGCTGGGAGTCGCGCCATTAAAAAACATCCGGGGGCAACCGAGCGT
GCTGAACAAATCCGGATG

UFO04656.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-RA 585 CG31093-RA 17..450 9..441 2025 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25789954..25790342 441..54 1775 97.7 Minus
3R 32079331 3R 25790410..25790455 54..9 230 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:55:10 has no hits.

UFO04656.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:09 Download gff for UFO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..461 9..451 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:02 Download gff for UFO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..461 9..451 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:20 Download gff for UFO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..461 9..451 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:20 Download gff for UFO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25789943..25790341 55..451 96 <- Minus
3R 25790410..25790455 9..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:02 Download gff for UFO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21615665..21616063 55..451 96 <- Minus
arm_3R 21616132..21616177 9..54 100   Minus