UFO04660.5prime Sequence
1091 bp (1012 high quality bases) assembled on 2009-06-30
> UFO04660.5prime
CAGTCGACATGTTAGGGAAAATGTCGCGGAACGTGACGCTCTCGGATGAA
CAAAGTCGGCTTAATGCGCGTCTGGAGGCGCACATGGTTTACATATGTCC
GGAATGCGGCAAGGCGTTCCGCACTCAGGCGGAGTGGCGACAGCATCTGA
ACACGAAACACGACTATCTAAAGAAGACGTACTCAGATTTCAACTTCATC
CAGATCGACGAGCGATTCCATGAGTGCCAGCTGTGCTTCAAATGGGTGGA
GAATGCCCACAAGACAATCGCCCTCCTGCAGTACCACTACTTTATGCATC
TGGAGCACAGTGAAACCTACCGCTGCGTGCACTGCCGCATGGCGTACACG
AGGCGCCGGGCTCTGAACGTCCACCTACTGGACACGCACATGCGGGAGAT
CGAGAAGTACGAGAACAAGCTGCGCCAGATGAAGCGGCAGCAGGCGAAAC
CCACTACAGCGGCCGCACCAGCTGGAAATGCAGAGAAGCCGATGGCTGTG
AAGCCGCGTGGGCGTCCCAAAGGTTCCACGAACAGAAAGCAAAATGATCT
GCTGCAAAAGGCGCTGATGGACATTGATCTGAACACAGAAATGGAAAAGT
CCCCAGTGACAGCACTAGCGGCTCCTGTAAACGAACCTAAGCCCATTTCA
AATGTCAGCGAGCTGAATCTAGATCGGTGTTTGAATGCCTACGAGGACAT
CGTGCGCAAGGAGGAGAAAGAGGTGGTGCCGAAGTATGACGACGAGTTGG
ATGCGCTCTGCAAGGAGTTTTTTGATGATGGCCCCTCCGCCGGCAAAGGA
GAAGCTAATGAGGAGCAGCAGCAAGACGATGCGCACCTGCAGCAAGGAAA
TCAGAGTGGTCATCATCGAGATCGATGCACTCGGCAAGGAGGAAGTGGCC
CAGCTGAAGAAGGAAATGAAGTCGGACCCAATAAGTCAACCGACTAAGCG
TCGACGCATCTCTACGACGCCCAGCCGCGACTCAGAACACGGAATGTCCA
CCAACGGCCTCACGAGCTCATATTCGTACTTGTGTCGAAGTGCGGCAAGG
AAATCGCCTCGATGACGGTGGCGGCACACGTATCAGAGCCG
UFO04660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 165..1245 | 9..1083 | 5165 | 99.1 | Plus |
| CG1024-RE | 2506 | CG1024-RE | 44..1124 | 9..1083 | 5165 | 99.1 | Plus |
| CG1024-RD | 2570 | CG1024-RD | 44..1124 | 9..1083 | 5165 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6379043..6379955 | 1064..155 | 4265 | 98.8 | Minus |
| 3R | 32079331 | 3R | 6380018..6380164 | 155..9 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:55:08 has no hits.
UFO04660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:29 Download gff for
UFO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RC | 44..1129 | 9..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:59 Download gff for
UFO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..1129 | 9..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:17 Download gff for
UFO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..1129 | 9..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:17 Download gff for
UFO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6379016..6379954 | 156..1088 | 98 | <- | Minus |
| 3R | 6380018..6380164 | 9..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:59 Download gff for
UFO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2205740..2205886 | 9..155 | 100 | | Minus |
| arm_3R | 2204738..2205676 | 156..1088 | 98 | <- | Minus |
