UFO04661.5prime Sequence
1104 bp (1006 high quality bases) assembled on 2009-06-30
> UFO04661.5prime
CAGTCGACATGAACCGCATCGACCTTACCCTGGACGACATGGCCAACAAC
AAGTTCCTCACCATGTACAGTACTTTGATCAAGAGCTTCGCTGCCTCCAC
GGAGTTTTCCACCAACGAAGTGGTCAGCTTGCTGATCGTGTTTTACAAGT
ACGCCCTGAACAACAGGTCCCGCATGATGTCCACCAGCCAGCTGTACAAT
CTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATCGACCGGAT
TTCGATGAATATCACGCAGGATGGCCGATCAGTCTCTCCAGAAGCCTGGA
TGCGGCTGTTCTGTGTGTTCTTCAACGGAAGTCTGCAGGAGCGAATGAAG
TTCGCATTTGAGGTTTATACAAGCGGTGGTGCTGTGGTTCTGAATCGCGA
GGTGGTCGGCGTGGCCATTGAACAATTCTTCACTGGCGATGACGACGACG
AGGTCAACGAATTGCGAGCGGACATGTGCGAGTTCATATTCGGAAAATTC
GACACTGACAAGGATGGGGTGATAGCGTTTGAAGAGTACGCCGAAATTGT
ACAGAATCAGCCTGGATTGCTCGAGTTTTTGGGTAAAATATTCCCGGATG
ACAAGGACAGATCACTGGTGGCGTACTGCCACAACATTGAGTCTATGTTT
CCGCCAGAAGGTTTATATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTC
TGATGTCATTACTGTATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
ATTACGCGCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCA
TTCTGCGACATGAAGCCATCACAACGGCATGATGACCTGATCGCAGCGCA
TCAGCACTTGTCGCTTGCGTATATATTTGCCATGTGAAACGGGGAGAGTT
GTCTATTTGACACGTTTATCAACTGCGACTCACCAGGATGCTGACCAAAC
ATAT
UFO04661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sunz-RA | 921 | CG15179-RA | 95..754 | 9..668 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6630245..6630600 | 9..364 | 1780 | 100 | Plus |
| 3R | 32079331 | 3R | 6630819..6631017 | 470..668 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 6630652..6630762 | 361..471 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:16:33 has no hits.
UFO04661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:52 Download gff for
UFO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sunz-RA | 72..738 | 1..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:06 Download gff for
UFO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sunz-RA | 91..757 | 1..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:31 Download gff for
UFO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sunz-RA | 91..757 | 1..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:31 Download gff for
UFO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6630241..6630598 | 1..362 | 98 | -> | Plus |
| 3R | 6630654..6630761 | 363..470 | 100 | -> | Plus |
| 3R | 6630820..6631020 | 471..672 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:06 Download gff for
UFO04661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2455963..2456320 | 1..362 | 98 | -> | Plus |
| arm_3R | 2456376..2456483 | 363..470 | 100 | -> | Plus |
| arm_3R | 2456542..2456742 | 471..672 | 99 | == | Plus |
