UFO04667.5prime Sequence
1136 bp (1024 high quality bases) assembled on 2009-06-30
> UFO04667.5prime
CAGTCGACATGACATTCTTCGAGCAGATCAGTGATCACTTTTGCCGCGTT
GTGCACACCAATCTCAAGATACCTCTATCATGTTGCGAAAGGCGCATCAA
CTGGAAAATCTCGAAAAGTATCGATTTATTGGTATTCTTTTATACCCTCA
ACATCGGTGTCCTTCGATTGTTAATAAATTTTATAGATTTCATGATCGTT
TTCTTCGGATGGCCAAGCAATCTTTTGATTTTAAAGGACTTCAATTCGCG
GCGCTTTCGAGCGCTCACACACTTTTTACTGGTGAGAGCGTACATGCTAA
TGATATACTCCATTGTATTTATCACTCCGCATAAGAATAATATCTTCGTT
CCGCTTTTTGCCATCATCATGACCATCGATGTGTATGTCATTAAATTAGA
TATGAAGCGACGTGGATTGATGCCTCTGGAGCGCAGTGTGCCCCCCCTAT
GGGAAATATTGATCAGCTTGTGCTGTGTTGTTGCCGGGCAATGGCTGCTC
AAGTATTTGATCTTTCATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGA
AACGGGGGCGAAGAGTTGTCCATATTGCCACGTTTAAATCAAACTGGTGA
ACTCACCCAGGGATGGCTGAGACGAAAAACATATCTCATAACCCTTTAGG
GAAATAGCCAGTTCACGTACACGCCACATCTGGCGAATATATGTGTAGAA
CTGCGAATCGTCTGCATTCACCTCCGAGCGATGAACGTCAGTTGCTCATG
AAACGGTTACAGGTACATTTCAATACAGGCTACCGC
UFO04667.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32588-RA | 677 | CG32588-RA | 77..591 | 4..518 | 2545 | 99.6 | Plus |
| CG43075-RA | 757 | CG43075-RA | 78..473 | 8..388 | 565 | 76.8 | Plus |
| CG33252-RA | 819 | CG33252-RA | 100..432 | 15..332 | 445 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15205893..15206090 | 518..321 | 990 | 100 | Minus |
| X | 23542271 | X | 15206394..15206560 | 170..4 | 820 | 99.4 | Minus |
| X | 23542271 | X | 15206169..15206319 | 320..170 | 740 | 99.3 | Minus |
| X | 23542271 | X | 15220940..15221099 | 167..8 | 425 | 84.4 | Minus |
| X | 23542271 | X | 16896936..16897088 | 167..15 | 300 | 79.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:39 has no hits.
UFO04667.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:46 Download gff for
UFO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32588-RA | 73..595 | 1..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:09 Download gff for
UFO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32588-RA | 73..595 | 1..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:53 Download gff for
UFO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32588-RA | 73..595 | 1..524 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:53 Download gff for
UFO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15205893..15206090 | 321..518 | 100 | <- | Minus |
| X | 15206169..15206318 | 171..320 | 99 | <- | Minus |
| X | 15206394..15206564 | 1..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:09 Download gff for
UFO04667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15099926..15100123 | 321..518 | 100 | <- | Minus |
| arm_X | 15100202..15100351 | 171..320 | 99 | <- | Minus |
| arm_X | 15100427..15100597 | 1..170 | 98 | | Minus |
