UFO04669.5prime Sequence
1090 bp (983 high quality bases) assembled on 2009-06-30
> UFO04669.5prime
CAGTCGACATGGCGTCACAAGGTTCCGGAGATATGAAGACCTCAAGGCTG
GCGCAAATGCAGATGCGTTTCCAGCAGCGCACGCAACAGGAGCAGGAGGT
GCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAACCTGGCCA
CTGGAGCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATGGGAAAGTG
CGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGATCGCAGCAA
TCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCAAACAAAAT
CTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGGCCGACTTG
ACCATGCGGGATGCACCAAATGCACCAGGCAGGAGGATCACTAGTGACAG
CAATAACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCGCAACCTTA
AGCCCGTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCACGCTCCAC
CAACGTTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCGACCCAACG
AGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCTTTCGCCAC
CATTTGTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGGTCAACATG
GACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGCTACTGCGG
ACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGTGTGCCAGC
GCATGCTGACCACCAAACGCAAGATATTCGATGCCTCCAAGCAGCGGATC
GAGGGCACCGAGGCCGCGGCGTTCAATATGAAGTCGAAGGCAATCGCAAC
CGTTCAACTTACAGTAGTGCTGCCCAGCAGAAGGTCTGACCACTGGAGTG
AAGAAGACAACTGGCGTAAGAAGCACGAGACTTCATTCAGTCGATTAGAG
CGGCCAAGCAAGGTGAAGGCGCCACTGGCGCGCGGCGGCAGTGAGCGACT
GCCACCACCGCCACCTCGGAGAATCAGAACTATGTCAGTGTCCCACTGTG
GGTCGCCGATTCACGAACAGGCTGCGAGCGTCTAATCCAG
UFO04669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-RF | 1834 | CG42675-RF | 621..1704 | 9..1082 | 4990 | 98.3 | Plus |
| CG42675-RC | 1765 | CG42675-RC | 552..1635 | 9..1082 | 4990 | 98.3 | Plus |
| CG42675-RB | 1688 | CG42675-RB | 475..1558 | 9..1082 | 4990 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5817513..5818068 | 60..615 | 2780 | 100 | Plus |
| 3R | 32079331 | 3R | 5818248..5818683 | 650..1076 | 1475 | 94.5 | Plus |
| 3R | 32079331 | 3R | 5815230..5815283 | 9..62 | 270 | 100 | Plus |
| 3R | 32079331 | 3R | 5818151..5818188 | 614..651 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:16 has no hits.
UFO04669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:11 Download gff for
UFO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10999-RB | 543..1641 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:44 Download gff for
UFO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RB | 466..1564 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:20 Download gff for
UFO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RB | 466..1564 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:20 Download gff for
UFO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5815221..5815283 | 1..62 | 93 | -> | Plus |
| 3R | 5817516..5818067 | 63..614 | 100 | -> | Plus |
| 3R | 5818152..5818187 | 615..650 | 100 | -> | Plus |
| 3R | 5818249..5818696 | 651..1090 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:44 Download gff for
UFO04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1640943..1641005 | 1..62 | 93 | -> | Plus |
| arm_3R | 1643238..1643789 | 63..614 | 100 | -> | Plus |
| arm_3R | 1643874..1643909 | 615..650 | 100 | -> | Plus |
| arm_3R | 1643971..1644418 | 651..1090 | 95 | | Plus |
