UFO04670.5prime Sequence
1099 bp (983 high quality bases) assembled on 2009-06-30
> UFO04670.5prime
CAGTCGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGGACTATCTG
CACAAGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGCTTCCAGAT
TCAGGGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGCCGAGTTCT
ATGCCGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCATTCTGCTT
TCGAAGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAACGCCGTGCA
GGAGCTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATCGGATCTGG
AACGCAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTCGTGAGATA
AACTTTATTTTTCCCAACTATATTCACGAGCCCCATCAAATGTTCGACCA
CAACAACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGAGGAGATCT
ACGACATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGAAGGTGCGT
GTTTCCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAAATCAGCAA
CCAGTGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATCGCAGCAGA
CCACCATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGCAGCCGGGA
GTCAAGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACATCCCCGCA
TTCCTCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGGAGGCTTCG
AAAGATCTCAGCCCGGTATTTCGGATCTGGACCTTAATAAGCGCGTAGAA
CCTCATGACGAGGAGCCAGTCTGTGTGGACGAGGAGATTTTGTGGAAGGA
AGTTATTGTCTACGAGGAAATCCAACCGGAGCTGAGGAGCAGAGTCCAAG
AGGACCTGCACGACCTGAGGAGGAAGGCGTAGCGAGTCTGGGGGCTCAAA
TGCGGAGTCAGACCGAATGTTTCATGAAGCCTCCCCCGCCACCAGCCTCA
AGATGACGAGTCCGAAAAGGGTGACGCCTGCTGCTGGGGGAGCAAGGCGA
ACTGCTCCCGCTCCTGAATGGCTCCTCCTGCCAGAGCTACTGCTGGCCT
UFO04670.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15547-RA | 1601 | CG15547-RA | 101..1197 | 5..1095 | 5060 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30882212..30882927 | 1082..370 | 2950 | 96.9 | Minus |
| 3R | 32079331 | 3R | 30883128..30883403 | 280..5 | 1380 | 100 | Minus |
| 3R | 32079331 | 3R | 30882983..30883071 | 369..281 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:41 has no hits.
UFO04670.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:10 Download gff for
UFO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15547-RA | 96..1202 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:34 Download gff for
UFO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15547-RA | 96..1202 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:51 Download gff for
UFO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15547-RA | 96..1202 | 1..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:51 Download gff for
UFO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30882191..30882927 | 370..1099 | 97 | <- | Minus |
| 3R | 30882983..30883071 | 281..369 | 100 | <- | Minus |
| 3R | 30883128..30883406 | 1..280 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:34 Download gff for
UFO04670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26707913..26708649 | 370..1099 | 97 | <- | Minus |
| arm_3R | 26708705..26708793 | 281..369 | 100 | <- | Minus |
| arm_3R | 26708850..26709128 | 1..280 | 99 | | Minus |
