UFO04671.5prime Sequence
1098 bp (1005 high quality bases) assembled on 2009-06-30
> UFO04671.5prime
CAGTCGACATGCAAAAACTGCGCAGTTTGTTTCTCAGGAAATCAGCCCAT
ACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGATGCCAGCAG
GCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTCTCGGGTTC
TTATCTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGAAGAGTGAG
GTGATTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTATTTGCCCC
AGATGTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGCGGAATACT
TCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAAAAGTTCGC
AACAATGAGACTTTTATACTCTCTCCACGACGCAATACTCTGCCGCAGAC
TGTTTCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCTGGTGGAGA
GCGCCACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCACCATCGAT
ATTAATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTGCGAAAGGT
GTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGCTGGCCCTT
ATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCAATCGCCGA
AATCAGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGCTTCAAGCG
GGAGCTAGCCGCATTTGCCTTAAAAGCACACAATGGCATTTACTCGACCA
CGATGGAGTGGCTAATACAGAACCAAACGAGGAAAATCCACAGGAACCGC
CGGGCATGAATATGCAGCACAGTCTATCTTCCATCTCACCCTCCACGATT
GTCACCAATAATGAAACCATTGAAAACACTGCTGCCCTTGATTGAGATTG
TACGAATCTACAGCCACCGGATTCCCCTCCCAGCGATGAGATTGTAAGAT
CGCTTACAGAAATGGGCTCGAGGAGACGGCAGTGCTTGCGGCGCTGAAGA
AAACTGCCAACACAGGCGTCCGCGTGCGATGGTTGGTGCGACATCGATCG
GTAGCGTATGGACCTGGCGGAAAGCTGCGACGATTCGCATCTAGGTGA
UFO04671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| isopeptidase-T-3-RB | 1778 | CG11025-RB | 105..1159 | 9..1057 | 4915 | 98.3 | Plus |
| isopeptidase-T-3-RC | 2491 | CG11025-RC | 533..1570 | 26..1057 | 4830 | 98.3 | Plus |
| isopeptidase-T-3-RA | 2479 | CG11025-RA | 533..1558 | 38..1057 | 4770 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19671359..19671850 | 36..527 | 2430 | 99.6 | Plus |
| 2R | 25286936 | 2R | 19671906..19672242 | 528..863 | 1635 | 99.7 | Plus |
| 2R | 25286936 | 2R | 19672294..19672477 | 863..1043 | 545 | 91.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:29:34 has no hits.
UFO04671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:35 Download gff for
UFO04671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isopeptidase-T-3-RB | 105..1169 | 9..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:47 Download gff for
UFO04671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isopeptidase-T-3-RB | 105..1169 | 9..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:42 Download gff for
UFO04671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isopeptidase-T-3-RB | 105..1169 | 9..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:42 Download gff for
UFO04671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19672294..19672504 | 863..1066 | 91 | -> | Plus |
| 2R | 19671267..19671295 | 9..37 | 100 | -> | Plus |
| 2R | 19671361..19671850 | 38..527 | 99 | -> | Plus |
| 2R | 19671906..19672241 | 528..862 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:47 Download gff for
UFO04671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15558772..15558800 | 9..37 | 100 | -> | Plus |
| arm_2R | 15558866..15559355 | 38..527 | 99 | -> | Plus |
| arm_2R | 15559411..15559746 | 528..862 | 99 | -> | Plus |
| arm_2R | 15559799..15560009 | 863..1066 | 91 | -> | Plus |
