UFO04674.5prime Sequence
1119 bp (1013 high quality bases) assembled on 2009-06-30
> UFO04674.5prime
CAGTCGACATGCCATGGTTTGGCATGGACATCGGCGGAACCCTCACCAAG
CTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGATCGCGA
GGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACTCGGCGT
ACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAATGTCGAG
ATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGACCACGGA
CATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCGAGCTGG
TGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAGCAGGAT
TTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCTGGACAC
GCTCATCAAAGGCATTCTTTTCGCCGATCTGCATAATCGCACGGAGTGCT
ACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAGCAGTTC
AATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATCCGGAGT
CTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTTCGGGCA
CGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTCACCGGC
TGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGACAATAG
GAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTACAACCGCT
TTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGATGCACCTC
AACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAACGCCACTCT
GGTCACCATAACGAATAATATCGGCTCCATAGCAAGGATGTGCGCGCTGA
ATGAGAGATCGATAGGGTCGTCTTTGTGGGCACTTTCTGCGAGTAACCCC
ATTTCATGAGCTGCTGGCGTACGCAATGGAGTTCTGGTCATGGCACAATG
AAGGTCTTTCCTGGAGCACGAGGGATACTTGGGGCTCTGGGTGCTGCTGC
AGTCACGGCGGCTGCAGCCGCCCTTAACGACGAATGGACATCCATCCAAC
TGAATTCGAATTCCAGCGA
UFO04674.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RG | 2352 | CG5725-RG | 416..1536 | 9..1109 | 5040 | 97.8 | Plus |
| fbl-RE | 2386 | CG5725-RE | 450..1570 | 9..1109 | 5040 | 97.8 | Plus |
| fbl-RC | 2093 | CG5725-RC | 157..1277 | 9..1109 | 5040 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20389913..20390208 | 183..478 | 1465 | 99.7 | Plus |
| 3L | 28110227 | 3L | 20390456..20390634 | 603..781 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 20388671..20388847 | 9..185 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 20390688..20390827 | 780..918 | 635 | 98.6 | Plus |
| 3L | 28110227 | 3L | 20390268..20390393 | 479..604 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 20390885..20391020 | 916..1042 | 270 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:00 has no hits.
UFO04674.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:54 Download gff for
UFO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RA | 382..1497 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:25 Download gff for
UFO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RC | 155..1265 | 5..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:20 Download gff for
UFO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RC | 155..1265 | 5..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:20 Download gff for
UFO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20388666..20388847 | 1..185 | 98 | -> | Plus |
| 3L | 20389916..20390208 | 186..478 | 99 | -> | Plus |
| 3L | 20390268..20390393 | 479..604 | 100 | -> | Plus |
| 3L | 20390458..20390634 | 605..781 | 100 | -> | Plus |
| 3L | 20390690..20390825 | 782..916 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:25 Download gff for
UFO04674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20381766..20381947 | 1..185 | 98 | -> | Plus |
| arm_3L | 20383016..20383308 | 186..478 | 99 | -> | Plus |
| arm_3L | 20383368..20383493 | 479..604 | 100 | -> | Plus |
| arm_3L | 20383558..20383734 | 605..781 | 100 | -> | Plus |
| arm_3L | 20383790..20383925 | 782..916 | 98 | -> | Plus |
