UFO04676.5prime Sequence
1119 bp (1043 high quality bases) assembled on 2009-06-30
> UFO04676.5prime
CAGTCGACATGGCTTCCCAGAGTAAGAACAGTGGGTTGACCAACAAGGTG
ACCACGGTGGTGGCCACCAATGCCTTCGGCGCTGATGTGATGAGCGAGAT
CAGCTACACGGACGCGAAAGTTGTGGGCAATGGCAGCTTCGGCGTGGTCT
TCCAGGCCAAAATGGTGCCCAGCAACGAAATGGTGGCCATAAAGAAGGTC
CTGCAGGATCGGCGCTTCAAGAATCGGGAACTGCAAATCATGCGCAAGCT
GCGCCACGATAACATCATCACTCTCAAGTGGTTCTTCTTTTCAAGTGGCG
AGAAAAGGGACGAGGTCTATCTGAACCTGGTCATGGAGTTCTTGCCGGAG
ACGCTGTATAAAGTGGAGCGACAGTACGCAAGGGCAAAGCAAACCTTGCC
AGTTAACTTTGTCCGACTTTACATGTACCAGCTGCTGAGGAGCATGGGAT
ATCTCCACAGCTTGGGATTCTGTCACAGGGACATCAAGCCGCAGAACATG
CTGCTCGATTCGGAGACGGGTGTGCTTAAGCTCTGCGATTTCGGCAGTGC
CAAGCAGCTGATCTCCGGCGAACCCAATGTCTCGTACATCTGCTCAAGGT
ACTATCGTGCGCCTGAGCTAATTTTTGGCTCCACTGACTATACCACCAAG
ATCGATATGTGGAGCGCCGGGTGTGTGATGTCAGAGTTGCTGCTGGGCCA
GCTCATCTTTCCCGGGGACTCGGGAGTGGACCAGATTGTAGAGATCGTCA
AGGTTATGGGCACTCCCACCTCGGAGCAGCTCCATGACATGAATCCGCAT
TACAAGCAGTTCAAGTTGCCGGAACTGAAGCCGCACCCCTGGTCCAAGGT
GTTCAGGATTCGCACACCGGCGGAGGCCATAGATCTGGTCTCCAAGATGC
TGATATACTCGCCCAATGCCAGGGTTTCTCCGTTGATGGGCTGTGCCCAT
CCGTTCTTCGACGACTTCGTCAGATCCACACCAGCAGTGCCCACGGCAGA
GCTGCCGCCGCTGTTTACTTTACGACTATGAGAAACATCGAGCCGGAACA
TGCGCTGCTCTGCGCGGGCTCAGGTCCAGCACCACAAGAGCAAGTGCTGC
CCCAGCACCGAATCAGCTG
UFO04676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1772 | CG31003-RA | 136..1249 | 9..1102 | 5075 | 98.1 | Plus |
| sgg-RR | 5004 | CG5-RR | 1456..1832 | 387..763 | 505 | 75.9 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2658..3034 | 387..763 | 505 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31372562..31373543 | 9..988 | 4795 | 99.7 | Plus |
| X | 23542271 | X | 2671374..2671545 | 483..654 | 335 | 79.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:38 has no hits.
UFO04676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:57 Download gff for
UFO04676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 128..1268 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:29 Download gff for
UFO04676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 128..1268 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:24 Download gff for
UFO04676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 128..1268 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:24 Download gff for
UFO04676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31372554..31373694 | 1..1117 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:29 Download gff for
UFO04676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27198276..27199416 | 1..1117 | 97 | | Plus |
