UFO04678.5prime Sequence
1137 bp (1029 high quality bases) assembled on 2009-06-30
> UFO04678.5prime
CAGTCGACATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCTCCGCTTC
GCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACGGACGTCT
AAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATGGCCGCAC
ATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTTGGATGCG
TCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGAAGGGCAA
CGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATTGGTGGCC
TGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGCCACTAAG
GTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCG
TACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCG
TGTATTCACTCCAGAGCGATGAAACGTTTCAGTTGCTCATGGAAAACGGT
GTAACAGGGTGAAACTATTCCATATCACAGCTCACCGTCTTTCATGCAAC
AAATTCGGATGACATCATCAGCGGCAGATGTGAATAAGCGATAACTTGTG
CTATTTCTTTACGCTTAAGGCGAATTCACTGAACGTT
UFO04678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oscp-RA | 802 | CG4307-RA | 319..697 | 8..386 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15266145..15266370 | 8..233 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 15266431..15266585 | 232..386 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:50 has no hits.
UFO04678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:59 Download gff for
UFO04678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscp-RB | 374..757 | 1..386 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:29 Download gff for
UFO04678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscp-RA | 314..697 | 1..386 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:37 Download gff for
UFO04678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscp-RA | 314..697 | 1..386 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:37 Download gff for
UFO04678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15266140..15266370 | 1..233 | 98 | -> | Plus |
| 3R | 15266433..15266585 | 234..386 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:29 Download gff for
UFO04678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11091862..11092092 | 1..233 | 98 | -> | Plus |
| arm_3R | 11092155..11092307 | 234..386 | 100 | == | Plus |
