UFO04679.5prime Sequence
1132 bp (1033 high quality bases) assembled on 2009-06-30
> UFO04679.5prime
CAGTCGACATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGTACGTGAAG
CTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTGGGCGAAGC
GGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGGAGGTGCCGC
TGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGGTGATGAAC
CTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGACATCCTCGG
ATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCTGGTGTGCG
AGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGATGAACATC
AACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATTGCCTCCAG
CTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATACTGGCCGATC
CCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCAAAACAATA
CCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTAAATCCGTT
GTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGTGCAAAAGA
CGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGGAGGATATC
AACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAATCCCAGCGG
TGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGGCCAAGCACC
CCATGATTCACCGCATCAAGGACGTGCGCAGCGACATACCAATCACGTTC
ATCTACGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGAGAAGATCAA
GTCGCAGCGCGGCAGCAATATGGTGGACATCAAGATCGTGACGGGCGCCG
GGCCACCACGTATATGCCGACAGCCGGACGTGTTCAACCGCTACGTGAAC
GAGACCTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGATACGCCCCTG
CAGCTATCCCGCGAATCCACCGAGTCCGACGAGGGAGCGCCGAGCCCAGC
CTGAACACAGCGAAAACGTCGAGTTCCAGCCAGAAGTTCAGCCGGTGCCA
ACTGTCACCGCGACCGGAACATCAGCGAACGC
UFO04679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-RG | 2695 | CG1882-RG | 556..1661 | 9..1111 | 5225 | 98.6 | Plus |
| CG1882-RF | 1756 | CG1882-RF | 358..1463 | 9..1111 | 5225 | 98.6 | Plus |
| CG1882-RE | 1668 | CG1882-RE | 270..1375 | 9..1111 | 5225 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7813347..7814437 | 9..1099 | 5065 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:07 has no hits.
UFO04679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:00 Download gff for
UFO04679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RD | 286..1404 | 1..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:29 Download gff for
UFO04679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RB | 179..1297 | 1..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:24 Download gff for
UFO04679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RE | 262..1380 | 1..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:24 Download gff for
UFO04679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7813339..7814453 | 1..1111 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:29 Download gff for
UFO04679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3700844..3701958 | 1..1111 | 98 | -> | Plus |
