UFO04682.5prime Sequence
1111 bp (980 high quality bases) assembled on 2009-06-30
> UFO04682.5prime
CAGTCGACATGGAGGAAGTTGCGGTAAAGAAGCGCGGCCGACCGTCAAAG
GCATCCGTCGGTGGTAAATCTTCAACAGCGGCGGTTGCAGCAATCTCGCC
AGGCATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTCCAGTGGCG
GTGGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATCCAAAATGAC
GAAGATCCCGAAGACGAGGGGGAGGAGGACGGCGATGGCGATGGCTCCGG
CGCTGAGCTTGCAAACAACTCATCACCCTCGCCGACGAAGGGCAGGGGAC
GACCCAAGAGCAGTGGTGGCGCCGGATCAGGATCCGGGGATTCGGTGAAG
ACGCCCGGTTCCGCCAAGAAGCGCAAGGCCGGCAGGCCCAAGAAGCACCA
GCCCAGCGATAGCGAGAATGAAGACGATCAGGATGAGGACGACGACGGCA
ACAGCAGCATCGAAGAACGTCGCCCAGTGGGCCGACCGTCGGCTGGATCC
GTCAACCTGAACATATCGCGCACGGGACGCGGCCTGGGAAGACCCAAGAA
GCGGGCTGTCGAGTCCAATGGCGATGGGGAGCCACAAGTGCCCAAGAAAC
GCGGTCGTCCACCACAGAACAAGTCGGGTAGCGGTGGCAGTACTGGCTAC
GTACCCACCGGTCGTCCGCGCGGTCGTCCAAAGGCCAATGCTGCACCCGT
CGAGAAGCACGAGGACAATGACGACGATCAGGACGATGAGAACTCCGGGG
AGGAGGAACACAGCTCGCCTGAGAAGACGGTAGTGGCGCCGAAGAAACGT
GGACGTCCCTCTCTTGCCGCTGGCAAGGTGTCCAAAGAGGAAACAACAAA
GCCCCGTAGTCGCCCAGCGAAAATATTGATGACGATGCAGATGATGCTGA
TTCCGCCGATCAGGCCAACACAACTCCAAGAGGAGTCGAACGACGAGGAC
CGTGCCGTGATGGAACACAACCAAAGGAGATGCCTCAATGGAACTCCGAT
GCGAAATGATGCCACGACGGTTATGTTCGATAACTAACACGATCGATCGT
AGCTGCCGCAGCTTCTAGAACAATTCGTTGGGGCCGGGCAGGTATGCTAA
TCATATCCTAT
UFO04682.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D1-RD | 1597 | CG9745-RD | 94..1140 | 9..1043 | 4890 | 98.6 | Plus |
| D1-RA | 1734 | CG9745-RA | 231..1277 | 9..1043 | 4890 | 98.6 | Plus |
| D1-RC | 1811 | CG9745-RC | 308..1354 | 9..1043 | 4890 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9238587..9239173 | 1001..422 | 2570 | 98.6 | Minus |
| 3R | 32079331 | 3R | 9239490..9239904 | 423..9 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:40 has no hits.
UFO04682.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:50 Download gff for
UFO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RB | 42..1095 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:13 Download gff for
UFO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 301..1354 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:56 Download gff for
UFO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 301..1354 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:56 Download gff for
UFO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9238540..9239171 | 424..1043 | 97 | <- | Minus |
| 3R | 9239490..9239911 | 1..423 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:13 Download gff for
UFO04682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5064262..5064893 | 424..1043 | 97 | <- | Minus |
| arm_3R | 5065212..5065633 | 1..423 | 99 | | Minus |
