UFO04683.5prime Sequence
1091 bp (975 high quality bases) assembled on 2009-06-30
> UFO04683.5prime
CAGTCGACATGCAAAAGCTGGACTCTTCGATAAAGGCGAACGACCAGGAA
ATCGGCGACGTTGACTGTCAGATAAAGCTAGACTTCCGGCTTTTGGTACC
CAGTTCCTCGATGGATCGGGGAGAAACCGAGCTACTACTTTCCCTTATAG
AAGTGGGACAGAAGCGCATTCTCATGCACCCGCTTTGCGAAACTTTCCTC
TTTCTTAAGTGGCGTCGCATTCGGAAATTCTTCCTTATGAGCCTTGCGTA
TCATACGCTTTTCGTGATCCTTTTCACTTTCTATGTAATTTGGGTGTATG
TCCGCTGCTGCAAGAAGGAGGAGTTGTGCGTGGCTCCAGGTTACGTTTCA
ACTATTGGATATCTGGTGATCATACTAAACCTCATTCTGCTGGGGAAAGA
GGTCTTTCAAATGGCACACGGACTTCGTGGCTACGCAAAATATTGGGAGA
ACTGGCTGCAATGGACCATTGGAACCGGTGTGCTCCTATGTGTAACACCG
GAGACCGTGCGAACTGACGATTTAACGGCAGTGCCGGTGTGGCAACATCA
CGTGGCAGCTATAGTGATATTGCTCGTCTGGCTGGAACTAATGATGTTGG
TGGGACGATTCCCCATATTTGGCGTATATGTTCAAATGTTCACAAAGGTG
GCCGTTAACTTTGCGAAATTCTTGCTTGCCTACATATGCCTGCTGGTGGC
TTTTGGCCTCAGCTTTGCCGTGCTCTTCAATGATTATCCTGCCTTTGAGA
ACATCACATGGTCCTTTTTGAAGTCCATCACGATGATGTCTGGGGAACTG
GAGTTTGAAGACATATTCTATGGGGACTATGCCGTCAAATTCCCTGTCAC
CGCTCACATCATATTTCTCTCCTTCGTGCTTCTTGTTACGGTAATTTAAC
CAATCTCATGGTGGGATTGGGCCGCAAGCGACATACAAGGATTGCAAGTG
AGCGCCACCCCTCGATCGTCTTCGTGCGGCAACGGAACTGTTCACGCTTG
AAGCCTATTTTTTTCTCCGCCTACTGCGAGTGCGCCACTACCTCATTCAG
CTGTGTAGAAGATGTCTTTTGTGCGTTCCCGGACAACTCAG
UFO04683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 2502 | CG17142-RB | 249..1302 | 9..1057 | 4900 | 98.3 | Plus |
| pyx-RA | 3966 | CG17142-RA | 1713..2766 | 9..1057 | 4900 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 219713..220352 | 648..9 | 3200 | 100 | Minus |
| 3L | 28110227 | 3L | 219336..219646 | 958..648 | 1445 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:34:48 has no hits.
UFO04683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:53 Download gff for
UFO04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RB | 249..1322 | 9..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:17 Download gff for
UFO04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..2786 | 9..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:53 Download gff for
UFO04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..2786 | 9..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:53 Download gff for
UFO04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 219212..219645 | 649..1074 | 94 | <- | Minus |
| 3L | 219713..220352 | 9..648 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:17 Download gff for
UFO04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 219212..219645 | 649..1074 | 94 | <- | Minus |
| arm_3L | 219713..220352 | 9..648 | 100 | | Minus |
