UFO04688.5prime Sequence
1135 bp (1025 high quality bases) assembled on 2009-06-30
> UFO04688.5prime
CAGTCGACATGTCGTGCAATCGTTCTTTTGGACCTGGCCCTGGTGCCTAC
AATCTGCCCAGCACCTTTGGGTTTAAGAACTGCGACAAGAGGATGCAGCG
AAGTCCACAGTTCTCATTTGGCAGATCGTCGAGGGCGTGTAATAGTCCTA
GGATACCGCAGGGACCCGGCCCAGCAGATTATCATGTGGGCAAAATAACG
CGATATGGACGTCCTGCATCGGAGGACTTCAATGTTTATCGTCGTCGCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCC
AGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTG
CCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTT
GCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGC
TCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGG
GCAGATGTGAATAAGGCCGGATAAAACTGTGCTTATTTTTCTTACGTCTT
TAAAAGCGTAATATCAGCTGACGTCTGCTATAGTACATGAGCACTGACTG
ATGCCTCAAATGTTCTTTACGATGCAATGGATATTCACGGTGCATATCCA
GTATTTTCCCATTAGCTCTCTTAGCTCTGAAAGAA
UFO04688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31468-RB | 967 | CG31468-RB | 153..393 | 8..248 | 1205 | 100 | Plus |
| CG31468-RA | 447 | CG31468-RA | 153..393 | 8..248 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23699902..23700124 | 248..26 | 1100 | 99.6 | Minus |
Blast to na_te.dros performed 2014-11-28 23:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 817..884 | 123 | 68.1 | Plus |
UFO04688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:03 Download gff for
UFO04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31468-RA | 153..396 | 8..252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:20 Download gff for
UFO04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31468-RA | 153..396 | 8..252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:00 Download gff for
UFO04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31468-RA | 153..396 | 8..252 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:00 Download gff for
UFO04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23699902..23700119 | 31..248 | 100 | <- | Minus |
| 3R | 23700180..23700202 | 8..30 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:20 Download gff for
UFO04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19525624..19525841 | 31..248 | 100 | <- | Minus |
| arm_3R | 19525902..19525924 | 8..30 | 100 | | Minus |
