UFO04695.5prime Sequence
1095 bp (990 high quality bases) assembled on 2009-06-30
> UFO04695.5prime
CAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTACACAAAGAG
CTGATGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATCGACACCGA
GAGCGTACAACAAAATTTATCCGAATGGAAAATAAACATTAAAGGTTTCG
AGGGCACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCAAATTCAAC
AATAAATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGCACCAATAT
ACCGGTGCATCCGCATGTCTACAGCAACGGACACATCTGCCTATCCATTC
TGACCGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGTGCCTTAGC
ATAGCCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCGCCGGACAA
CACGATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGACTAAATGGT
GGTACCACGATGATTCTGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CACATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAACGGGGGCGAAGAGTTGTCCATATTGCCACGTTTAAATCAAAACTG
GTGAACTCACCCAGGGATTGGCTGAGACGAAAAACATATCTCATAAACCC
TTAGGGAATAGCAGTTTCACCGTACACGCCCACATCTGCGATATATGTGT
AGAACTGCGAATCGTCGTTGCTATCACTCAGAGCGATGAAACGTTTCAGT
GGCTCATGGAAACGGGGTACAGGGTAACACTCCAGTACCAGCTCA
UFO04695.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7220-RC | 1672 | CG7220-RC | 208..669 | 9..470 | 2310 | 100 | Plus |
| CG7220-RA | 1771 | CG7220-RA | 307..768 | 9..470 | 2310 | 100 | Plus |
| CG7220-RD | 1742 | CG7220-RD | 278..739 | 9..470 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10737058..10737291 | 226..459 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 10736893..10736997 | 125..229 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 10736655..10736748 | 31..124 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:17 has no hits.
UFO04695.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:01 Download gff for
UFO04695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 302..778 | 1..478 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:43 Download gff for
UFO04695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 302..778 | 1..478 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:22 Download gff for
UFO04695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 268..744 | 1..478 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:22 Download gff for
UFO04695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10736657..10736748 | 33..124 | 100 | -> | Plus |
| 2R | 10736893..10736995 | 125..227 | 100 | -> | Plus |
| 2R | 10737060..10737291 | 228..459 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:43 Download gff for
UFO04695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6624162..6624253 | 33..124 | 100 | -> | Plus |
| arm_2R | 6624398..6624500 | 125..227 | 100 | -> | Plus |
| arm_2R | 6624565..6624796 | 228..459 | 100 | == | Plus |
