UFO04696.5prime Sequence
1059 bp (957 high quality bases) assembled on 2009-06-30
> UFO04696.5prime
CAGTCGACATGACCGATTCGGACGAATCTTCCTGGATTCATTGGTTTTGC
AAGCAGCGTGGCAACGAATTCTTTTGCGAGGTGGATGAGGAATATATCCA
GGACAAGTTTAACCTTAACTTTCTTGATTCGAACGTTAAGAACTACAAAT
GTGCCTTGGAGGTGATCCTGGATCTCAATCCGGGTTCAGCCTCGGAAGAC
CCCGCTGAACCAGAACTGGAGGCTAGTGCAGAGAAACTGTATGGCTTGAT
CCACGCTCGTTTTATCCTAACCAACCGGGGCATCGAACTGATGTTGGACA
AGTACAACAAGGGCGAATTCGGGACATGTCCACGTGCATTCTGCCATAGC
CAGCCGGTGCTGCCCATTGGTTTGAGTGATAATCCTGGCGAGGATATGGT
ACGCATCTATTGCCCCAAGTGCAATGATGTGTACATTCCCAAGGCGTCGA
GACATTCGAATCTGGATGGAGCCTTCTTTGGCACTGGATTCCCTCATATG
TTCTTTATGGAGAAACCGGATGCTAGGCCCAAGCGGGCAAAGCAGAAGTT
TGTGCCCAGGCTTTATGGCTTTAAAATCCACCCCACGGCCTACCGTACTG
CCGCTGAGATCCAAAAAGATGTGACAATGACGCCAGTAGGAGAAATCGAT
AGCCCATCCCACATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCCGCCCTGCCACTCATCGCAGTACTGTGTAGTCATTAGCATTC
TGCGACATGCAGCATCACAACGCATGATGACTGATTCGGCAGCCGCATCA
GCACTGGTCGGCTGCGTATATATTGCCATGTGAACGGGCCAGAGTGTCGA
ATGCCACGT
UFO04696.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIbeta2-RA | 912 | CG8914-RA | 135..790 | 9..664 | 3190 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20289679..20290230 | 9..560 | 2670 | 98.9 | Plus |
| 2R | 25286936 | 2R | 20290319..20290428 | 555..664 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:07 has no hits.
UFO04696.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:02 Download gff for
UFO04696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta2-RA | 48..708 | 1..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:02 Download gff for
UFO04696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta2-RA | 130..790 | 1..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:53 Download gff for
UFO04696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIbeta2-RA | 130..790 | 1..664 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:53 Download gff for
UFO04696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20289674..20290229 | 1..559 | 98 | -> | Plus |
| 2R | 20290324..20290428 | 560..664 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:02 Download gff for
UFO04696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16177179..16177734 | 1..559 | 98 | -> | Plus |
| arm_2R | 16177829..16177933 | 560..664 | 100 | == | Plus |
