UFO04707.5prime Sequence
1073 bp (996 high quality bases) assembled on 2009-06-30
> UFO04707.5prime
CAGTCGACATGTGGGTGTTGCCCGGAGTGACCACCACCGTCTGGATGGGC
ACGTGCAGGGGAATGTCGAAAACGGGCTTCAAGCTGGAAAAGAAGAAGTC
TGCTCATGGTGATATCGCCGGCATCGTCGGCCACCACCAGGTAGTCGGAG
GCACTAGCCAATCCCGTCACCCTGCCAGAAACGTATTTGGAGCCCAGACT
GCAGCCGTTGATGCTGTACACGTGCACCGAGTGCGAGGTGTCATCCAGAG
CACTGAATGCAATGTGACCTGTGTGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCACTC
CAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACAAGGG
TGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAT
CCCGGATGAGCATTCATCAGCGGGCAGGATGTGATAAGGCCGGATAACTT
GTGCTTATTTTTCTTTACGTCTTTTAAGCCGTATACCCGTGAACGCCTGG
TATAGTACATTGAAACACTGACT
UFO04707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43367-RF | 9817 | CG43367-RF | 8062..8315 | 269..9 | 1145 | 96.2 | Minus |
| CG43367-RE | 10170 | CG43367-RE | 8415..8668 | 269..9 | 1145 | 96.2 | Minus |
| CG43367-RD | 9842 | CG43367-RD | 8087..8340 | 269..9 | 1145 | 96.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4222184..4222362 | 275..97 | 895 | 100 | Minus |
| 3L | 28110227 | 3L | 4222412..4222501 | 98..9 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:01 has no hits.
UFO04707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:57 Download gff for
UFO04707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32252-RA | 227..505 | 1..280 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 23:45:02 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 21:33:31 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:31 Download gff for
UFO04707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4222184..4222360 | 99..275 | 100 | <- | Minus |
| 3L | 4222412..4222505 | 1..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:02 Download gff for
UFO04707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4222184..4222360 | 99..275 | 100 | <- | Minus |
| arm_3L | 4222412..4222505 | 1..98 | 95 | | Minus |
