UFO04711.5prime Sequence
1086 bp (931 high quality bases) assembled on 2009-06-30
> UFO04711.5prime
CAGTCGACATGGGAGGCTCAGGTTCCGAATCAAATTTATCTACAAATTCT
GGCCCAGAATTCGATTCTGATTTTGGCGGCGGCGGTTGTGTTTACGATTG
TTGTGCAATGGCCAAATCGATAACAGAAACGAGAACCACAAATTCTACGG
CGGCAACCATAACTGCAATACACACTCGCAAAAGCACCACAACAATCGCA
TTTGTTCTGCTGTTAATCCTCTGCTGTTTATGTGATTACAACCATGGAAG
CTGGGCATCGCAATGCTGGAAAAAGCACAATTCCGGCTCGATCCAAACGC
CAGATGGAGAATTTAAGCGACCCTTTGGCATACTCTGCACATATCGCTGC
TTTCTCTGGTTTCCGCCAATTTATCCGTACTGTGAATTCATATTCGATCT
GCGCTTATCGAGGCACTTCACATCCTTTCCGGACTGCTACGAGATTCGCT
GCAACGAGACCTTCTCCTTTTTCGGCAAGGAGCCCCATTACGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAACCGAGCGT
TCTGAAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCAT
CACAAACGGCATGATGAACCCTGAATCGCCAGCGGCCATCAACACCTTGT
TCGCCTTGCGTATAATATTTTGCCCATGGTGAAAACGGGGGCGAAGAAGT
TGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAACTCACCCAGGAAT
TGCTGAAAACGAAAAACATATTCTCATAATCCTTTAAGGAAATAGGCCAG
GTTTTCACCGTACACGCCACATCCTGCGATATATGTGTAGAACTGCCGAA
TTCGTCTGGTATTCACTCCAGACGCATGAAACGTTT
UFO04711.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1545-RB | 717 | CG1545-RB | 98..582 | 7..491 | 2410 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11059279..11059522 | 250..7 | 1205 | 99.6 | Minus |
| X | 23542271 | X | 11057680..11057800 | 491..371 | 605 | 100 | Minus |
| X | 23542271 | X | 11058365..11058485 | 370..250 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:02 has no hits.
UFO04711.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:54 Download gff for
UFO04711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1545-RB | 90..588 | 1..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:47 Download gff for
UFO04711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1545-RB | 90..588 | 1..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:35 Download gff for
UFO04711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1545-RB | 90..588 | 1..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:35 Download gff for
UFO04711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11059280..11059524 | 1..249 | 97 | | Minus |
| X | 11057680..11057800 | 371..491 | 100 | <- | Minus |
| X | 11058365..11058485 | 250..370 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:47 Download gff for
UFO04711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10952398..10952518 | 250..370 | 100 | <- | Minus |
| arm_X | 10951713..10951833 | 371..491 | 100 | <- | Minus |
| arm_X | 10953313..10953557 | 1..249 | 97 | | Minus |
