UFO04712.5prime Sequence
1096 bp (995 high quality bases) assembled on 2009-06-30
> UFO04712.5prime
CAGTCGACATGCGTGAAATTGTACACATTCAGGCCGGTCAATGCGGTAAC
CAGATCGGTGGTAAATTCTGGGAGGTAATCTCGGATGAGCACTGTATAGA
TGCGACCGGAACGTACTACGGCGATAGTGATCTCCAGCTGGAGCGCATCA
ATGTATACTACAATGAAGCCACCGGTGCCAAGTATGTGCCACGCGCAATT
CTCGTGGACCTGGAGCCCGGCACCATGGATTCGGTTCGTTCTGGCGCCTT
TGGCCAGATCTTCCGGCCGGACAATTTTGTGTTTGGCCAATCGGGAGCAG
GCAACAACTGGGCCAAGGGTCATTACACCGAGGGTGCTGAACTGGTGGAT
TCCGTCTTGGATGTGGTGCGAAAGGAGTCCGAGGGATGCGATTGCCTTCA
GGGCTTCCAGCTGACCCACTCGCTGGGTGGCGGCACTGGCTCCGGCATGG
GAACCCTGCTGATCTCGAAGATCCGCGAGGAGTACCCGGACCGCATCATG
AACACCTTCTCGGTGGTGCCCTCGCCCAAGGTGTCCGATACGGTGGTGGA
GCCCTACAATGCCACCCTGAGTGTGCATCAGCTGGTGGAGAACACCGATG
AGACGTACTGCATCGACAACGAGGCGTTGTATGACATCTGCTTCCGCACA
CTGAAGCTGACCACGCCCACCTACGGTGACCTGAACCATCTGGTTTCGGC
CACCATGTCTGGTGTGACGACCTGCCTGCGCTTCCCTGGCCAGCTGAACG
CTGATCTTCGCAAGCTGGCCGTGAACATGGTACCCTTCCCCCGGCTGCAC
TTCTTCATGCCCGGATTCGCACCGCTCACCTCGCGAGGATCGCAACAATA
CCGGGCCCTTACCGTTCCGGAGCTGACCCAGCAGATGTTCGATGCCAAGA
ACATGATGGCTGCGTGCGATCCGCGACATGGTTCGCTATCTGACCGTCGC
CGCCATCTTTCGTGACCGCATGTCATGATGGAGGGGAACGAGCAGATGCT
CAACATTCAGAAACAAGAACCAGCCAGCTCTTCGTGGAAATGAATCCCGA
ATACTTGCCAAGACCGCGGGTTGCGATATTCTCGCCCGAAAGTCTC
UFO04712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1841 | CG9359-RA | 231..1304 | 9..1087 | 5015 | 98.1 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 118..1122 | 15..1020 | 2485 | 83.4 | Plus |
| betaTub56D-RA | 1701 | CG9277-RA | 274..1227 | 66..1020 | 2410 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9408990..9409603 | 1012..399 | 2900 | 98.9 | Minus |
| 2R | 25286936 | 2R | 19447800..19448746 | 1012..66 | 2345 | 83.6 | Minus |
| 3R | 32079331 | 3R | 9409659..9410052 | 402..9 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 24311188..24311792 | 396..1000 | 1730 | 86.5 | Plus |
| 3R | 32079331 | 3R | 27972919..27973153 | 532..298 | 725 | 87.2 | Minus |
| 3R | 32079331 | 3R | 27968968..27969189 | 922..701 | 660 | 86.5 | Minus |
| 2R | 25286936 | 2R | 24310910..24311138 | 174..402 | 425 | 79 | Plus |
| 3R | 32079331 | 3R | 27969667..27969829 | 691..529 | 410 | 83.4 | Minus |
| 3R | 32079331 | 3R | 27969439..27969553 | 642..528 | 260 | 81.7 | Minus |
| 3L | 28110227 | 3L | 6531605..6531726 | 702..823 | 220 | 78.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:29:43 has no hits.
UFO04712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:13 Download gff for
UFO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 223..1282 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:53 Download gff for
UFO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 223..1282 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:47 Download gff for
UFO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 223..1282 | 1..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:47 Download gff for
UFO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9408959..9409600 | 402..1046 | 97 | <- | Minus |
| 3R | 9409660..9410058 | 1..401 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:53 Download gff for
UFO04712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5234681..5235322 | 402..1046 | 97 | <- | Minus |
| arm_3R | 5235382..5235780 | 1..401 | 99 | | Minus |
