UFO04717.5prime Sequence
1062 bp (660 high quality bases) assembled on 2009-06-30
> UFO04717.5prime
CAATCGACATGGATTCCAAACTATATATGTTCGAGGACGTGAACACGTCA
CCTTCATTGGAGGGCGACATGTCGATTCCGGGCAAAAGAACCACAACTGC
AACGTCCGCGAGCGGAGTGCCGGAATACAATACTCTGGATGAGCCCATCC
GCGAGACAGTGCTGAGGGACATTCGGGCCGTAGGCATTAATTTCTACCAC
GTCCTGTACCCCAAGGAGAAGTCCAGTCTGCTACAAGATTGGGACCTTTG
GGGTCCACTGGTGCTGTGCACCTTCATGGCCACCATACTACAAGGCTCCT
CCACCGCCGACAGCATGTCTGACAACGGACCCGAGTTCGCCCAGGTCTTC
GTAATCGTCTGGATAGGTGCAGCCGTAGTCACACTCAACTCCAAGCTGCT
GGGCGGCAATATCTCATTCTTCCAATCCGTCTGCGTGCTGGGCTACTGCC
TTACGCCGGTGGCCATTTCCCTAATTGTGTGCCGGGTAATCCTGCTTGCC
ACCCAAACGCGGCTGCTCTTCTTTCTGCGTTTTGTGACCACCACCATAGG
CTTTGCCTGGGCCACTTACGCTTCCTTTGTTTTCCTGGGTCAGAACCAGC
CTCCCCATCGAAAACCGCTTGCCGTGTACCCCATCTTTCTGTTCTTCTTC
ATCATCTCGTGGTTGGTTCTTTCCCACAATGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGAGCCCAGGGAAGTGGTCATAATCGTAATCATAATCATA
ATCATAATCACAACTAGCCTACGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGATCGTTCTGAAGAAATC
CTATGGAGTTCTGATGTCATTACTGTATCTATCAACAGGAGTCAAGCGAG
CTCGATATCAATTACGCCCGCCCTGCACTCATCGCAGTACTGTGTAATTC
ATTAAGATCTGCCGACATGTAGCCATCCAGAACGGCATGATGACCTGAGT
CGCGCGGCATAGACCTTGTCGCTGCGATAATATTGCCCATGTGAAACTGG
CGTCAAGATTGT
UFO04717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3652-RA | 867 | CG3652-RA | 87..758 | 9..680 | 3285 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4393501..4393715 | 241..27 | 1030 | 98.6 | Minus |
| 2L | 23513712 | 2L | 4393262..4393433 | 412..241 | 860 | 100 | Minus |
| 2L | 23513712 | 2L | 4393042..4393199 | 570..413 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 4392879..4392989 | 680..570 | 540 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:16:32 has no hits.
UFO04717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:19 Download gff for
UFO04717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3652-RA | 23..696 | 5..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:24 Download gff for
UFO04717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3652-RA | 85..758 | 5..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:20 Download gff for
UFO04717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3652-RA | 85..758 | 5..680 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:20 Download gff for
UFO04717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4392879..4392988 | 571..680 | 99 | <- | Minus |
| 2L | 4393042..4393199 | 413..570 | 100 | <- | Minus |
| 2L | 4393262..4393433 | 241..412 | 100 | <- | Minus |
| 2L | 4393502..4393728 | 15..240 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:24 Download gff for
UFO04717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4392879..4392988 | 571..680 | 99 | <- | Minus |
| arm_2L | 4393042..4393199 | 413..570 | 100 | <- | Minus |
| arm_2L | 4393262..4393433 | 241..412 | 100 | <- | Minus |
| arm_2L | 4393502..4393728 | 15..240 | 96 | | Minus |
