UFO04718.5prime Sequence
1139 bp (1030 high quality bases) assembled on 2009-06-30
> UFO04718.5prime
CAGTCGACATGTCCCAGACCCTGGACGATCTGCTGTTGCGCCAGGAGCAC
GCCCGGCAATTGCGCCAGGCCACGCGCTCCAAGTTCCGGCGCATCAATTC
GCTGGATCTAATACCGGAGCATCCCAGCCAATCGGAGGAGGAGGAGGACA
AGGAATCCCAGACGGCCCACAAGCACTTTGTCACCCTGAGACGACAGCGG
ACGGCTGATGGCAATCTGCTGAGGCATCAGTTTCAGACGCAGTCGCCGCC
ACAACCCAATTTAGGCACACGGGTCCTGCTCTTCGGACCACAACTGCTGA
TGCGTCTGGTGCTGACCATCTTGAGATACGTCCTCTACATACCACTGTCC
ATTGCGGCGCCAAGCTTTTGGTTGTCCGCCCTGCTCTGGATCTTTTGGAA
ACTGCTGCGGGTACCCATTGCGTTGGTCAAGTGGCTACTGAGCGGCGAGG
AGGAGCTGGGTGCAGTGCAGCGACAGAAGACCATACTCCTCAGCTGCGGC
AGCACCATACAGACCCTACATTTGGCCAGGAACTTCTACGGATCCGGCGC
CCGTGTGGTGGTCTTTGAGTTCGAGGGTTTGTTCGGATTGGCCAGATTTT
CCACAGCGGTGGACAAATTCTATGTGGTGCCACGGCCAACGGCCAGTAAT
CCGGATCAGTACATAGCCGCCCTGTGCCACATCGTGAAGAAGGAACGACC
CTCGGTCTATATACCCGTTTGTGCCACCAGTCCGGCATACTATGATTCCC
TGGCCCGACCACATCTGGAGGTCCTGGGCTGTGCCAGTTTCATACCCGGC
GTGCAGAGACACTGCAGCTGGATGACTGCCTCCAGCTCTTTCAGAGATGC
GAACAGCAACAGATGGCTCTGCCAGCCCATGTGGTGCTGACAGCTCCACG
GCAATTGCAGCAGATCTACGAGAGCGGTTTCGTGGGCAGCTATAGGAACA
TACTCATGGCCGCAGGATGCAGGAGTCCTGGAGCGGCACAAGTACATACT
GCCCAATAGGCGGGCGGAACTAAAGCTGAATCAGCACGATATCAGGGAGC
GGCACGTGCTAGTTGGTAAAGGATCAGCAGCTATCACCACTATGTGACCT
GCCCACACGTCAGGATCACGGGTGGTGCCCAATGTTGAA
UFO04718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13607-RC | 2210 | CG13607-RC | 177..1312 | 9..1135 | 5325 | 98.5 | Plus |
| CG13607-RA | 2129 | CG13607-RA | 96..1231 | 9..1135 | 5325 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24114941..24116076 | 1135..9 | 5110 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:48:58 has no hits.
UFO04718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:31:59 Download gff for
UFO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13607-RA | 62..1206 | 1..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:53 Download gff for
UFO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13607-RA | 88..1233 | 1..1139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:42 Download gff for
UFO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13607-RA | 88..1233 | 1..1139 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:42 Download gff for
UFO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24114938..24116083 | 1..1139 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:53 Download gff for
UFO04718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19940660..19941805 | 1..1139 | 98 | | Minus |
