UFO04719.5prime Sequence
1117 bp (999 high quality bases) assembled on 2009-06-30
> UFO04719.5prime
CAGTCGACATGGACGTGTCCCTCACTGAGCCGGAGACGCGCTTCTACAGT
GAGTTGTTCCAATGCTGCGACGTGGAGAAGACAGGCAAGGTGCCCATGCT
TAAGGCCACCGAGCTCTTTCGCTCGGCGGACATCGCCAATGAGACCGTGA
TTGAGATCACCGGTCTGGCGGGGATACCCTCCACGGCGCTACACATCTCG
CGGACACAGTTCTACTCATGCCTGAAGCTAATCGCTGCTCATCAGGCGGC
CATGCCCCTGCGCCAGGAGCTGATCTTGGCCACGTTTCCGCTTCCATTAC
CGCACTTTAGCTGGAAGGAGGCGGTTACAGCTCCGGTGGCTGTCGAAAAT
GGATTGACTGCCTTGCCACCGCCACCACCCACAGATCGCAGAAATTCACT
GCGTCGTAACTCGCAGCAAGAGCAGCTGCAAGACACCTCTGATGTGCCCA
GCACCGACTCCGAGGTTGAGCAAAACGAATCAGTGGACGATGCGACAGGC
CATGGACGAGGTACGGATGGCTGTGGGGTCGTCAGCAGCAGCAGCCGCGA
AAATGTCGGGCGACGACGAGGAGGCGGTACTGGTGGTGGATCGCCAGAAG
CCTGGAGCACTAACAGTGACAGCCCCACGCCCACCAACAGCGTGGCTGAG
CGGCCTTGGGCGCAGGACACCCTCTGGCAGGGTTTGCTGGGCGACGAGCA
TCGCCAGCTGCTAGGCACGGAGGAAGAGTCTTCCGATCGCCACAGCAGCG
ACGACGATGACAACGAGAGCGAATTGGTGACCATTTACCAGATAACCCCG
GAACAGCGCGAGTACTATAATAAGCAGTTCACGACGGTGCAAAGGGATCC
GCATGGTCTGCTTTCGGGCCAAGCAGCAAGAAACTTTTTGAAAAGAGCCG
CATTCCTGTGAGAGCTACGTCACATTTGGCAGTTGTGTGACGTTACCCGC
GATGGAGCGCTAAGTCTGTCTGAGTTTACGCGCAATGCATTGGTGGTCTA
CGCGCAACAACATCCCTTGCCACCAGTCTGCCCACTGTGCATCCCACGTG
CTAAGCAGCTGCTCGCATGGACAGGGGTGACATCTCGTCATCGCGGCTGC
CTAGGACACTGAGGCGT
UFO04719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Reps-RB | 4733 | CG6192-RB | 432..1539 | 8..1093 | 4985 | 97.7 | Plus |
| Reps-RA | 4820 | CG6192-RA | 432..1539 | 8..1093 | 4985 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11105607..11106013 | 560..154 | 2035 | 100 | Minus |
| 2L | 23513712 | 2L | 11105205..11105525 | 880..560 | 1590 | 99.7 | Minus |
| 2L | 23513712 | 2L | 11106067..11106214 | 155..8 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 11105034..11105131 | 980..885 | 410 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:11 has no hits.
UFO04719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:12:44 Download gff for
UFO04719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6192-RA | 421..1476 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:14 Download gff for
UFO04719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reps-RA | 428..1483 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:50 Download gff for
UFO04719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reps-RA | 428..1483 | 1..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:50 Download gff for
UFO04719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11104958..11105136 | 881..1046 | 91 | <- | Minus |
| 2L | 11105205..11105524 | 561..880 | 99 | <- | Minus |
| 2L | 11105607..11106011 | 156..560 | 100 | <- | Minus |
| 2L | 11106067..11106218 | 1..155 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:14 Download gff for
UFO04719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11104958..11105136 | 881..1046 | 91 | <- | Minus |
| arm_2L | 11105205..11105524 | 561..880 | 99 | <- | Minus |
| arm_2L | 11105607..11106011 | 156..560 | 100 | <- | Minus |
| arm_2L | 11106067..11106218 | 1..155 | 98 | | Minus |
