UFO04720.5prime Sequence
1124 bp (1028 high quality bases) assembled on 2009-06-30
> UFO04720.5prime
CAGTCGACATGCATAGCACATCGTACTTTGTGGCCGCGACATGCGCGGCG
CTGCTTCTGCTGGCGGCGACGGCGCAGTCGACGGCAGCAGCGCAGTCAGG
ACTGCAGCCAGGTGGCAAGTTAATCGAGTTGGACGAGGACAACTGGCACC
TGATGCTCCAGGGCGAATGGATGATCGAGTTCTTTGCTCCATGGTGCCCG
GCCTGCAAGAACCTGGCTCCCACCTGGGAGCGGTTTGCCCGCGTGGCCAA
GGATGTCCAGGTGCAGGTGGCCAAAATCGACGTGACAACCTCGCCCTCGC
TGAGTGGACGCTTCTTTGTCACCGCCCTCCCCACCATCTACCACGTAAAA
GATGGCGAGTTCCGGCAGTATCGTGGGGCCCGTGATGGCGACGCCCTCCT
CTACTTCGTGAAGAAGCAGCAGTGGCAGAGCATCGAACCGCTGTCCGCCT
GGAAGAAGCCCGACACCACCCACATGTCCGTGCTGTCCTACTTCTTCAAG
CTTTCGCACACTCTGAAGGACTTCAACGGGCGCCTGCAGGAGGAATACGG
ACTGCCCACGTGGGGCTCCTACGCCCTCTTCGCCATCGCCACCATCTTCG
TGGGCGCTGCCCTGGGGCTGCTGCTCGTGTGCCTTGTGGACTTTGTCTAC
CCACCCAAGAAGTCGCAGCGCCAGAGCTTCTCCGAGTCCCAGGACAATCT
GACCGAGGGCCTGGAGGATTTGGCAACCGAGGAGATCGAGGATGATGGCG
ACGCCGAGGAGAACGATGACGAGCAACGCGATAGCGACGAGGAAGAACAG
GAGGACGACGACGAAGAGGAAGAGGACAGCGAGGAGCAGTGGGCGATCTG
GCCACTAAAGAGAAGGAGCCGACAGCGAGCCGGAAAAGGAAGAGAGCCGG
AGCCCAAGCAGGCCGGCGATGCTGCGCCCGAGAAGACGGACAGTGCGCAA
GCGCAAGCCTCGCAAAGGCGATGCAAGCTTCTAGACATTCGTTTGGCGCG
GCGGGCCCAGGTAGTGGTCATATCATATCATAATCATAATCATATCACAA
CTAGCCTAAGAGATCTGGTCATGACCTATGGCTGATTCTCAACAATAAAC
GCTGGCGCCACCTGAACGTTCGGA
UFO04720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5554-RA | 1565 | CG5554-RA | 157..1127 | 7..972 | 4730 | 99.5 | Plus |
| CG5554-RB | 1586 | CG5554-RB | 157..1148 | 7..972 | 4510 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23846125..23846586 | 516..972 | 2065 | 98.5 | Plus |
| 2R | 25286936 | 2R | 23845766..23845941 | 344..519 | 880 | 100 | Plus |
| 2R | 25286936 | 2R | 23845157..23845331 | 7..181 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 23845535..23845696 | 182..343 | 810 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2298..2499 | 732..931 | 121 | 55.8 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 7209..7250 | 39..80 | 120 | 76.2 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 198..239 | 39..80 | 120 | 76.2 | Plus |
UFO04720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:12:46 Download gff for
UFO04720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5554-RA | 262..1236 | 1..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:07 Download gff for
UFO04720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5554-RA | 153..1127 | 1..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:15 Download gff for
UFO04720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5554-RA | 153..1127 | 1..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:15 Download gff for
UFO04720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23845153..23845331 | 1..181 | 98 | -> | Plus |
| 2R | 23845535..23845696 | 182..343 | 100 | -> | Plus |
| 2R | 23845766..23845940 | 344..518 | 100 | -> | Plus |
| 2R | 23846128..23846586 | 519..972 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:07 Download gff for
UFO04720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19733058..19733219 | 182..343 | 100 | -> | Plus |
| arm_2R | 19733289..19733463 | 344..518 | 100 | -> | Plus |
| arm_2R | 19732676..19732854 | 1..181 | 98 | -> | Plus |
| arm_2R | 19733651..19734109 | 519..972 | 98 | | Plus |
