UFO04723.5prime Sequence
1112 bp (984 high quality bases) assembled on 2009-06-30
> UFO04723.5prime
CAGTCGACATGCGTGTGGGCCAGCTGCTCCGCTTCCGGAGCACCAGCTTG
CGCAGCTCCACCGCCAGGCAGGAGTACGTGCCGCATCACAAGCCCGTCGT
GGAGGACGACATCAAACGGCTGGAGGACTTTCTCCTGTCCAAACCGAATG
TTTTGGTTCTCACGGGCGCTGGCATCTCGACGGAATCGGGGATTCCCGAT
TACCGTTCCGAAGGCGTGGGCCTCTACGCCCGCTCCAACCACAAGCCCGT
CCAGCACATGGAGTTCGTCAAGTCGTCGGCGGTGCGCAAGCGGTACTGGG
CCAGGAACTTTGTGGGCTGGCCCAAGTTTTCTGCCACACAGCCCAATGCC
ACGCATCACGCGCTGGCCAGATTCGAGCGGGAGGAGCGGGTCCAGGCGGT
GGTCACCCAGAACGTGGACCGGCTGCACACGAAGGCGGGCAGCCGAAATG
TTGTGGAGGTTCATGGCAGTGGCTATGTGGTCAAGTGCCTGTCATGCGAG
TACCGGATCGATCGTCACGAGTTCCAGAGCATACTGGCGTCGCTAAATCC
GGCCTTCAAAGATGCCCCCGACATGATCCGGCCCGATGGCGATGTAGAGA
TACCGCTGGAGTACATCGAGAACTTCCGGATACCCGAGTGTACGCAGTGC
GGCGGCGACTTGAAGCCGGAAATTGTCTTCTTCGGAGATTCTGTGCCTCG
GCCACGAGTGGGATCAGATTGCCGGCATGGTGTACAATAGCGATGGGCCT
GCTTGTCCTCGGGTCCAGTCTCCTGGTCTTCTCCCGGCTACCGCGTTGTC
CTGCAGACCAAGGGACCTCAAGCTACCGGGTGGGCATTGTTAATATTGGC
GAAACGCGCGCCGATCACCTGGCGGATATCAGGATATCCGCCAAGTGCGG
CGATGTCATACCCAAACTGTTCGACTTTCGCAATTCGAAAAGCGTCAGTT
GCAAGCTTTCTAGGACCATTCGTTTCGCGCCGCGGGCCCAGGTTAGTGGT
CATATCATATCATATCATAATTCATAATCCACACCTAGCTTAGGAGATCC
TTGTCATGACTAGTGTCTGGAATCCTCACAAATAAAAACGCCCCGGGGCA
CCGAACGATCTG
UFO04723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sirt4-RC | 1112 | CG3187-RC | 73..1009 | 9..950 | 4570 | 99.4 | Plus |
| Sirt4-RB | 1253 | CG3187-RB | 394..1150 | 189..950 | 3670 | 99.2 | Plus |
| Sirt4-RA | 1198 | CG3187-RA | 340..1095 | 190..950 | 3665 | 99.2 | Plus |
| Sirt4-RB | 1253 | CG3187-RB | 73..253 | 9..189 | 905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5664731..5665487 | 950..189 | 3545 | 99.2 | Minus |
| X | 23542271 | X | 5665687..5665868 | 190..9 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:25 has no hits.
UFO04723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:54 Download gff for
UFO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 102..1040 | 9..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:48 Download gff for
UFO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 73..1011 | 9..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:58 Download gff for
UFO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 73..1011 | 9..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:58 Download gff for
UFO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5665688..5665868 | 9..189 | 100 | | Minus |
| X | 5664727..5665486 | 190..954 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:48 Download gff for
UFO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5558760..5559519 | 190..954 | 98 | <- | Minus |
| arm_X | 5559721..5559901 | 9..189 | 100 | | Minus |
