UFO04724.5prime Sequence
1089 bp (984 high quality bases) assembled on 2009-06-30
> UFO04724.5prime
CAGTCGACATGGTGCAGTCGGGGATTTGGCGTTCGAAACCAATTCTCTGG
CGGATAAGATTTTGCGCGGCGATATATTTTATTATTATTAGAGCGCTGTG
CAACACTGTCACAAAGCCGATAGCTTCGATAACGGCCGATAAACAGTTAC
GTAGCATCTCCACTTCGAACACCATGTCTTTCCGCCCATTGGTCGAGGGC
GACTGCGGTGGAGTTAATCCTCTCATGCAACTGGGCGGACAGTTCACCCG
CGATGTTGCCCACAAGGATGAGGGCTATGTGCAGCGACACTTCGAGCGCG
CTGCTCGTCCCGAGGACCAGTTGATCAACGAGTTCCTGGGACAGGTCACT
GCCCCACCGCAGTCATTTCAGATGGACACTCTGCTCCAGGAGATGCGGGA
CATAAATATTCACGGAAATCCGCAGCAGCAGATGCACTCTCAGCAGGCGG
AGCAGTGGGGACAGGACTTTGCCCGCGGACTGGCACCCGCCCTGCCCAAC
AAGATGATCCACATGCAGGCACAGCAGCAGGACCTGCAGCATGCCCAGGA
GTTCTTCGACGAGCCCCTGATCAGTAGCCAGAACTTTCGGTCCCTGCCGC
CATTGCGTCAGCCTTTGATGCCCATTGCGGCAGGACAGCAACAGGACCCC
TTCTTTGACTCCGCCATGGAAACTATAATCACAGATCATCTGCCACAGGC
GCCACAGGGGGAATCGCTGGACGACTGGATCAGCGACTACCAGCGCAGCA
CCGAACAAAAAGAGCAAACCGCCGCCAACTTCAACGAAAAGTTCTGGGAG
CGGCTGCAAGACGAGTGGCAGAAGCTGGCCGACGAGAACGAGCATCCGTG
GCTGTCGGAGTACAACGACAATATGGACGCTTATAGAGTACGAGTTCGCC
GAGGGCAACCCCATGGTCTGATGGTGGAGAAACCGTTGAAAGGGTAAGGA
GTACCTGGTCCCAAAAGGGATATACCCAGCGCAGTTCTATTGTTTCGAGG
TGGCCGCAAAGCAACCGGAGCGCGGCTGAAGGTTCTGGCAGTGCTTGGTC
CCTCCCAGACAAAAGAACGAAATTGATCCCAGTCATGCG
UFO04724.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex5-RA | 2158 | CG14815-RA | 137..1208 | 8..1080 | 4860 | 97.5 | Plus |
| Pex5-RB | 1972 | CG14815-RB | 87..1022 | 144..1080 | 4180 | 97.1 | Plus |
| CG14803-RB | 3404 | CG14803-RB | 1..56 | 63..8 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1867835..1868717 | 1024..144 | 3940 | 98.1 | Minus |
| X | 23542271 | X | 1868787..1868925 | 146..8 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:44 has no hits.
UFO04724.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:12:40 Download gff for
UFO04724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14815-RA | 132..1176 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:56 Download gff for
UFO04724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex5-RA | 132..1176 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:10 Download gff for
UFO04724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex5-RA | 132..1176 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:10 Download gff for
UFO04724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1867813..1868714 | 147..1048 | 97 | <- | Minus |
| X | 1868787..1868929 | 1..146 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:56 Download gff for
UFO04724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1762820..1762962 | 1..146 | 97 | | Minus |
| arm_X | 1761846..1762747 | 147..1048 | 97 | <- | Minus |
