UFO04726.5prime Sequence
1056 bp (1034 high quality bases) assembled on 2009-06-30
> UFO04726.5prime
CAGTCGACATGGTCCACCTAAATGAGAAAGCGGAGGATCAGCTGATGACC
ACAAGGATTTCGGATTTGCAGGATTGGCTGCAGGCGCAGCCACAGTTGCC
GCAAAATATATCCCGATTGCTTCTGCGCCGCTTTCTGCACACGACGCGGG
GTGATCTATCCGCCGCCCAGCGACTCTTGGAACTGAATTACGGACTGCGT
AACAAACATGCACACATCTTCATCGATCGCGATCCGTTGGATGCCAGTTC
CCAGCAGCTACTGCAAGTCGCAGATCTGGTGCCGTTGCCCGGCTTGACCC
CGGAGAACAACAAGCTGCTCTTTTACCGCCTCATCGACTTCGATGCGGAC
AAGTTCAACTTTACGGCTGCCATCAAGGTCTTTTTCATGGTGGCCGACTG
TCGATTTGCGACGGAGAACGAGGAGCGTTTGTCGGACGGCGAGATACCAG
TTTTCGACATGGCTGGCTATACGCTGCGCCACCTGACCAAAACCGCACTG
GGCGCCCTGCGTGTCTACATGAAGTTCGTCCAGGAGGCACATCCCGTACG
GCTCAAGGAGATCCACGTGCTCAACTGCCCGTCGTATGTGGACAAGGTGA
TGGCCGTGGTCAAGCCGTTCATCAAGGGAGAGGTGTTCAAGCTAATCCAT
TTCCATTTGCCAAATGCGGACACTCCATATCGGCACTTCCCGCGATCCAT
GTTGCCGGAGGAATACGGCGGGGAGGCGGGCAAGATGTCCGACCTGAAGC
TCCAGTGGATGCAGTTGCTCAAGGAGCAGAGGGATTATCTGATGGATACG
GAAACTGGCAAATAAACAAAATCAAAAAGAATGGCCACGAAAGTCAGTGA
TCCCGGAGTCACAGAGGGTCTACGTTCCCTCGAAATTGATGCAAGCTTTC
TAGACATTCGGTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCATAATCA
TATCATAATCATATCCCAACTAGCCTAGGAGATCTGGTCATGATTAGTGG
CTGGATTCTCAACATAAAAACGCCCGGGCGGCACCGAGCGGTTCCGAACA
ATACCA
UFO04726.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3823-RA | 1282 | CG3823-RA | 142..1031 | 4..890 | 4330 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6305864..6306294 | 352..782 | 2155 | 100 | Plus |
| X | 23542271 | X | 6304717..6304876 | 112..271 | 800 | 100 | Plus |
| X | 23542271 | X | 6304116..6304223 | 4..111 | 525 | 99.1 | Plus |
| X | 23542271 | X | 6305684..6305765 | 272..353 | 410 | 100 | Plus |
| X | 23542271 | X | 6306381..6306494 | 780..890 | 390 | 95.6 | Plus |
Blast to na_te.dros performed 2014-11-28 21:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5A | 2841 | G5A G5A 2841bp | 1067..1124 | 984..1040 | 116 | 71.2 | Plus |
UFO04726.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:00 Download gff for
UFO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3823-RA | 125..1016 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:57 Download gff for
UFO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3823-RA | 140..1031 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:46 Download gff for
UFO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3823-RA | 140..1031 | 1..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:46 Download gff for
UFO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6304114..6304223 | 1..111 | 97 | -> | Plus |
| X | 6304717..6304876 | 112..271 | 100 | -> | Plus |
| X | 6305684..6305765 | 272..353 | 100 | -> | Plus |
| X | 6305866..6306293 | 354..781 | 100 | -> | Plus |
| X | 6306383..6306494 | 782..890 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:57 Download gff for
UFO04726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6200416..6200527 | 782..890 | 95 | == | Plus |
| arm_X | 6198147..6198256 | 1..111 | 97 | -> | Plus |
| arm_X | 6198750..6198909 | 112..271 | 100 | -> | Plus |
| arm_X | 6199717..6199798 | 272..353 | 100 | -> | Plus |
| arm_X | 6199899..6200326 | 354..781 | 100 | -> | Plus |
