UFO04728.5prime Sequence
958 bp (824 high quality bases) assembled on 2009-06-30
> UFO04728.5prime
CAGTCGACATGGCCGGAGAAACAGAGCAGCTAACGTTGCTTAGTGAACTG
AACAATATTGGAGGTGGCGAGTTCGAGTCGGGATACTGCCTGAATGAGAA
ACCTATTCTGCCGCCAGTGATGACTGACTGGAAGAGACTGGAAATGATGC
GACTGCGCTTGTGCGCCTTAACCAAGGAGGTGGTCCAGAAGAGGAACCAG
ATTACAAATCCTGAACGGAGGGATGCATCTACCAATACAAAATCGCAACA
AGGATTTGGTTGTCCGGTCATAATGGGACGCTTCCGCCAGAGATTACAGC
AATCGGAGACAATGATCTATGATCACACAGCCGAGATGACCATGCAGATT
TCTGCTCCGCCTAGCATGCCAATTGGGATGACTTCTCAGCTGGTAATGGA
GGATGCTTCTCTGACTCCGCCGCAAAGAGTTGTTGTCACGCTGACACCCG
TGAAGTTGGCCACAGCAGAGAGTGTTTGGGTGACCAAGTTGGATCCACCG
AAGGCGGAGAAACCCAAGCCAACGGAGAATGTCCTGGAACCACTTCATCG
GAGCTCTACCAGTCCTGATCTTTCGAAGCTTCATCACCAACTGTGGCGAA
GAGATCTGATGCAGATTCCCAAGTCACAGTTTACTTTGCCTATAAAATGT
GAGCCACAAAGTGTACAATGTATCGAGCAGCAGCAACCCAATAAGCTTAC
GACATCAGAGTCCCAGTCGAATCCCGAAACTGATTACCAGCCATGTGCCA
CAGTGCCAGTGTCACCAAACCCAGAGTGCTACCAGCCCGACGCCACCTAT
GACGCCAAGTGGCTGCAGCGAAAATCTGGTGAGCAGGGCAGATTTCTCAG
TCACGAATCTCTGCTGAAACAGCCACTGATGTGCGAAAGCATAGACTCCA
TGCGTCATAAGAACAGATTTGCAGACAAAGCATCAAGATCGCTCAGTCTT
GATTCTCG
UFO04728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2267-RA | 1734 | CG2267-RA | 196..1056 | 7..853 | 3925 | 98 | Plus |
| CG2267-RB | 1731 | CG2267-RB | 196..1053 | 7..853 | 3870 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30627972..30628667 | 808..119 | 3095 | 98 | Minus |
| 3R | 32079331 | 3R | 30628721..30628833 | 119..7 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:27 has no hits.
UFO04728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:12:50 Download gff for
UFO04728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 192..1058 | 1..857 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:50 Download gff for
UFO04728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 192..1058 | 1..857 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:28 Download gff for
UFO04728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 192..1058 | 1..857 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:28 Download gff for
UFO04728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30627917..30628666 | 120..857 | 97 | <- | Minus |
| 3R | 30628721..30628837 | 1..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:50 Download gff for
UFO04728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26453639..26454388 | 120..857 | 97 | <- | Minus |
| arm_3R | 26454443..26454559 | 1..119 | 96 | | Minus |
