UFO04729.5prime Sequence
1057 bp (979 high quality bases) assembled on 2009-06-30
> UFO04729.5prime
CAGTCGACATGATTTTTATGCCTGCTCTAAACTTGCTTGTGTACAACGTA
CTTGTAGGTTACATAAGCATGGAAATCAATCGAATCATAAATGTTTCTAC
AGCCCAGACAAGTCTTTGGCAGAATATTCCTATTATCGGCCAGATGTTCG
CTCCGTTACAACCGGAAACCAATTATGGAGTGGAGTTCGGGGAAAGCATG
TGGGACTTTAACCTATATGTAAACATCTTACTGCTTCTCCCCGCATTTTT
TCAGATCTATCACATCTCCTTGCTGGTGGCGATTGTTCTCATGTGGAACT
GCTACCTTCACCAGTGTCTGGCTGCTTTCCACCTGAAGATGGTGTGGCAC
TTGTGGTGGAGCGACCTATGCTGGAGCTACTACGCTTCTCTTGTCCTTTT
CGGATTCCTGTTGACCATGCTGCACTTTAGTCTGATTATAGCAACCGTTA
TGTATCAGATGCAGATCGACGGAGATCCCAAACCTCGGATCCAGTCCGAG
GCTCTCCCAGAGCAGCAGCCACATCCCGCAGAGGAAATTCAGGAACGAAT
GGCAATGGCCCAGACCATTAAGATCGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAACGGCATGATGAACCTG
ATCGCCAGCGGCATCAGCACCTGTCGCCTGCGTATATATTTTGCCCATGG
TGAAACGGGGGCGAAGAGTATCAAATGGCCCGTTAATCAACTTGGGAACC
TCAGCAGGGATTGCTGAGACAAAAACTATTCTCATAACCCTTTAGGAATA
GGCAGGT
UFO04729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11404-RA | 806 | CG11404-RA | 22..590 | 7..575 | 2845 | 100 | Plus |
| CG11404-RB | 797 | CG11404-RB | 22..581 | 7..575 | 2700 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22548803..22549126 | 252..575 | 1620 | 100 | Plus |
| 3L | 28110227 | 3L | 22548591..22548752 | 93..254 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 22548458..22548544 | 7..93 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:41 has no hits.
UFO04729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:01 Download gff for
UFO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11404-RA | 14..593 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:40 Download gff for
UFO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11404-RA | 14..593 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:44 Download gff for
UFO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11404-RA | 14..593 | 1..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:44 Download gff for
UFO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22548592..22548752 | 94..254 | 100 | -> | Plus |
| 3L | 22548450..22548544 | 1..93 | 96 | -> | Plus |
| 3L | 22548806..22549129 | 255..579 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:40 Download gff for
UFO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22541550..22541644 | 1..93 | 96 | -> | Plus |
| arm_3L | 22541692..22541852 | 94..254 | 100 | -> | Plus |
| arm_3L | 22541906..22542229 | 255..579 | 99 | == | Plus |
