UFO04730.5prime Sequence
1081 bp (971 high quality bases) assembled on 2009-06-16
> UFO04730.5prime
CAGTCGACATGAGTTCAAATAATGTAAATGAGTGCAAGAGCCTGTGGAAT
GGCATAATTTCCATTTCTGCAAAAGATGAAAGTCCTAAAGGTCTCACTGA
AATGTGTAATCATCCAAAGAGGAGAGCACCGCCCAAATGTAAGCCAATGA
AGTCCTGTGCAAAGCCGCGCCGAAAGGCAGCCTGTGCCAAGGCGACTCGG
CCCAAGGTCAAGTGTGCACCGAGTCAGAAGTGCAGCAAGCAGGGACCTGT
CACTAACAACGCCTATTTGAATTTCGTGCGTTTCTTCCGAAAGAAGCACT
GTGACTTGAAGCCGCAGGAATTAATTGCAGAGGCCGCTAAAGCGTGGGCC
GAGCTCCCGGAGCATAGAAAGGATAGATACCGCCGGATGGCATGCAAGGT
CACCACCAGTGAACGCCACAAGCGCCGACGGATTTGCAAGGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACA
AACGGCATGATGAACCTGAAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATA
TTGGCCACGTTTAAATCAAACTGGTGAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCATAAACCCTTTATGGAAATGGCCAGGTTTCACCG
TACACCGCACATCTGCGGAATATATGTGTAAACTGCGGAATCGTGTGCAT
TCACCCTAACGATGAAACGTTCAGTTTGCTCATGGAACGGGTACAGGGTG
AACCATTCAATCCCGGTCACGTCTTTCATTG
UFO04730.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst35Bb-RA | 679 | CG4478-RA | 142..573 | 9..440 | 2160 | 100 | Plus |
| Mst35Ba-RB | 643 | CG4479-RB | 124..552 | 9..437 | 1890 | 96 | Plus |
| Mst35Ba-RA | 683 | CG4479-RA | 164..592 | 9..437 | 1890 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14882306..14882687 | 390..9 | 1910 | 100 | Minus |
| 2L | 23513712 | 2L | 14879237..14879618 | 390..9 | 1655 | 95.5 | Minus |
| 2L | 23513712 | 2L | 14882207..14882258 | 440..389 | 260 | 100 | Minus |
| 2L | 23513712 | 2L | 14879141..14879189 | 437..389 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:49:11 has no hits.
UFO04730.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:02 Download gff for
UFO04730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst35Bb-RA | 130..570 | 4..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:03 Download gff for
UFO04730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst35Bb-RA | 136..576 | 4..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:51 Download gff for
UFO04730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst35Bb-RA | 136..576 | 4..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:51 Download gff for
UFO04730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14882207..14882257 | 390..440 | 100 | <- | Minus |
| 2L | 14882307..14882693 | 4..389 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:03 Download gff for
UFO04730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14882207..14882257 | 390..440 | 100 | <- | Minus |
| arm_2L | 14882307..14882693 | 4..389 | 99 | | Minus |
