UFO04731.5prime Sequence
1101 bp (1005 high quality bases) assembled on 2009-06-30
> UFO04731.5prime
CAGTCGACATGCCATTGAAGTGGTCCCTGCTACTCGGCACTTTTGTGCTC
ATCAGCTGCTCCTCCGTGGAAGCAGCCGTCACAGTGGGTCGGGCCTGCAA
GGTGACGGATACCATGCCCGGTATCTGCAGAACATCCTCCGATTGTGAGC
CCCTAATCGATGGCTACATCAAGTCGGGAGTCCTGACGCTCAACGATGTG
CCCAGCTGTGGCCTCGGCGCTTGGGGTGAGATCTTCTGCTGTCCCACCAA
GCCGTGCTGTGACAATAGTACCATAACAAGCGTTTCCACAAGCTCCACCA
CAAGCACAAAAGCTCCAATGACCAGTGGTCGTGTCGATGTGCCCACGTTC
GGAAGCGGTGATCGCCCAGCAGTGGCAGCCTGCAAGAAGATTCGCGAGCG
AAAACAGCAGAGGAGCGGCAATCAATTGGTCATACACATCGTGGGCGGTT
ATCCGGTTGATCCGGGTGTATATCCCCATATGGCGGCCATTGGTTACATC
ACTTTTGGCACCGATTTCCGATGCGGCGGATCGCTAATCGCCAGTCGCTT
CGTCCTGACCGCCGCACATTGTGTCAACACCGATGCCAATACGCCGGCCT
TTGTTCGCTTGGGAGCTGTGAACATTGAAAATCCAGACCATTCCTACCAG
GATATCGTCATACGAAGCGTTAAGATCCATCCGCAGTATGTGGGCAATAA
GTACAACGATATCGCCATTTTGGAACTGGAACGTGATGTCGTCGAGACGG
ATAACATCCGGCCCGCTTGTCTCCATACGGATGCCACCGATCCGCCATCG
AACTCCAAGTTCTTTGTCGCCGGTTGGGGCGTCCTAAATGTAACCACTCG
GGCGCGATCTAAGATCCTGTTGCGCGCTGGTCTGGAGCTGGTGCCTCTGG
ACCAATGCATATATCCTATGCGGAGCAGCCCGGTTCCATAAGTTGCTCAG
CAGGCGTGATCGATTCGTGCTTGTGCGCCATTGATCAAAAGCTCATCGCG
ACGCATTCAAGGCGGACTCCGTGGGGCGCTCATCATGAGCCAAAGGTGAA
GGACGATGTAACATCATGGGCGTCTCCTCGCCGGAATCGAATGCCACCGT
T
UFO04731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| psh-RA | 1645 | CG6367-RA | 299..1385 | 9..1084 | 4960 | 97.8 | Plus |
| Hayan-RD | 2290 | CG6361-RD | 1518..1991 | 464..930 | 340 | 73.1 | Plus |
| Hayan-RB | 2408 | CG6361-RB | 1518..1991 | 464..930 | 340 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18485296..18485581 | 662..377 | 1430 | 100 | Minus |
| X | 23542271 | X | 18485813..18485999 | 268..82 | 935 | 100 | Minus |
| X | 23542271 | X | 18485054..18485237 | 846..663 | 920 | 100 | Minus |
| X | 23542271 | X | 18484780..18484995 | 1055..847 | 565 | 91.7 | Minus |
| X | 23542271 | X | 18485645..18485756 | 378..267 | 560 | 100 | Minus |
| X | 23542271 | X | 18486063..18486138 | 84..9 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:02 has no hits.
UFO04731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:12:51 Download gff for
UFO04731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psh-RA | 299..1293 | 9..999 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:21 Download gff for
UFO04731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psh-RA | 299..1293 | 9..999 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:03 Download gff for
UFO04731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psh-RA | 299..1293 | 9..999 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:03 Download gff for
UFO04731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18484839..18484995 | 847..999 | 96 | <- | Minus |
| X | 18485054..18485237 | 663..846 | 100 | <- | Minus |
| X | 18485296..18485579 | 379..662 | 100 | <- | Minus |
| X | 18485645..18485754 | 269..378 | 100 | <- | Minus |
| X | 18485813..18485996 | 85..268 | 100 | <- | Minus |
| X | 18486063..18486138 | 9..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:21 Download gff for
UFO04731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18378872..18379028 | 847..999 | 96 | <- | Minus |
| arm_X | 18379087..18379270 | 663..846 | 100 | <- | Minus |
| arm_X | 18379329..18379612 | 379..662 | 100 | <- | Minus |
| arm_X | 18379678..18379787 | 269..378 | 100 | <- | Minus |
| arm_X | 18379846..18380029 | 85..268 | 100 | <- | Minus |
| arm_X | 18380096..18380171 | 9..84 | 100 | | Minus |
