UFO04732.5prime Sequence
1141 bp (1016 high quality bases) assembled on 2009-06-30
> UFO04732.5prime
CAGTCGACATGCTGGACAAGAAGATTGATGAGGGTCCCGACTACGATTCG
GCCAGCGAGACGGAGATCGCATTGGAGGAGGCCCGACTAAACGCCCTGCG
TCAACATTGGGAGTCCGCCAGCATTACGGCCTCCATCTGCTCCTCGGCCA
GCCGCTCGCTGCAGACGACGCCCATCCGCCAGGTGCAGGTGCCATTGAAG
CAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGCCTTCTAGCGCCTCGGC
GGTCACCGCCTCCACCTCCTCCTCCTCCTCATCGACGATAGTCGCGCTGC
CCACGACGGAGTATCTACCTCAGCATGTGTTGACGGGACGGCAAGTGGTG
CAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCAGTGCTCTACCAGCA
GCAGCAGCAGCAACTAATACTGCTGCCCCAGTTGGATCCTAATGTTGTCA
ACACGTCCACGGCAGCAGCAGCGGCACAGCTCGTCCAGTTGCAGCAGCAG
CATCAACAGCAGCAACAACAGCTACAGCTGCAGCAGCAACAGCAGCTGCA
ACTCAATCAGCAGCAGCAGCAGCAACTTTACCAGCAGCAGCAACAGCAAT
ACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCAGAGCGTGAGTCCAAAG
CGCCTGATCTATGGTGGACCCGCTGCAACCACTCTCCTCTGTGCAACTGG
CATCAAATGCAACGCCCCCGAAACTTACGAACCGCCAACCGCTCCACACA
GCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGCCGGGCGCCTACTAC
GGCGAGATGATGCACGGCGTACAGGCCGCTCCAGCGGCGGAATACAAGTT
CCCGCCGGCCATCAGCGTGCAGAGACTGGCGCCGCAGTGCAGCGGCAGTT
GCGCGAGACGCAGAACTCATAAAAGACTCGTGCCCGCAGCTGTTTTGCGG
CCGGGCTTATGGCAGCCCAGGACCACCGATACGCCAATCCCAGCAGGACC
CCCACTAGAACTAAGACCACCCTGGAAGACCGCAGTTCTTCGCAGGACTC
TCTCGGCCAGCTTTCTAGAACATTCGTTGGCCGCGCGGGCCAGGTATGGT
CTATCTAATCATATCATATCTAATCCAACTAGCCTAGAGAT
UFO04732.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tow-RF | 1988 | CG14821-RF | 787..1827 | 8..1052 | 4915 | 98.7 | Plus |
| tow-RD | 2654 | CG14821-RD | 802..1842 | 8..1052 | 4915 | 98.7 | Plus |
| tow-RC | 1508 | CG14821-RC | 307..1347 | 8..1052 | 4915 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6947246..6947915 | 31..700 | 3350 | 100 | Plus |
| 3L | 28110227 | 3L | 6948275..6948477 | 822..1026 | 665 | 93.7 | Plus |
| 3L | 28110227 | 3L | 6947985..6948110 | 700..825 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:01 has no hits.
UFO04732.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:04 Download gff for
UFO04732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tow-RC | 291..1338 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:48 Download gff for
UFO04732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tow-RC | 301..1348 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:52 Download gff for
UFO04732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tow-RC | 301..1348 | 1..1055 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:52 Download gff for
UFO04732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6947986..6948109 | 701..824 | 100 | -> | Plus |
| 3L | 6948278..6948501 | 825..1052 | 93 | -> | Plus |
| 3L | 6947248..6947915 | 33..700 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:48 Download gff for
UFO04732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6940348..6941015 | 33..700 | 100 | -> | Plus |
| arm_3L | 6941086..6941209 | 701..824 | 100 | -> | Plus |
| arm_3L | 6941378..6941601 | 825..1052 | 93 | -> | Plus |
