UFO04733.5prime Sequence
919 bp (813 high quality bases) assembled on 2009-06-16
> UFO04733.5prime
CAGTCGACATGAGAACCTTGACGGCATTTGCGATTATCGCTTTTTTTGCA
CTGGCTCTAACGGAGGCGGCTGTTTACATCGGTGGCGGTTGCTACGACTG
TAATCCACCCGGAGGCCAAGGACCTGGAGTCTACACAGGTGGCAACGGAG
GACGAGGAGGAGGAGGTGGATACAACGCAGGCGGAGGCGGTGGAGGATAC
TACAACGGCGGCGGAGGTGGAGGAGGTGGCCGTCGTCCAGTATATTCGGG
CAACTTTGGACCCGGCTATGGTAACGGCGGAGGAGGAGGTGGAGGAGGCT
ACGGAGGCGGCGGTGGAGGTGGCTACGATGATGGCGGTCTTACGCAGATT
ATAAGCGGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGATGAAAACGGGGG
CGAAGAAGTTGTCCATATGGCCACGTTTAAATCAAACTGGTGAAACTCCA
CCAGGGATTGCTGAGACGAAAAACATATTCCTCCAATAAACCCTTAGGAA
ATAGCCGTTTTCCCCGTAACACGCCCATCTTGCGATAATGTTGAAACGCC
GAAACGCCGGAATTCATTC
UFO04733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5778-RC | 503 | CG5778-RC | 75..425 | 9..359 | 1755 | 100 | Plus |
| CG5778-RA | 657 | CG5778-RA | 75..425 | 9..359 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22085606..22085865 | 359..100 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 22086229..22086323 | 103..9 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:11 has no hits.
UFO04733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:05 Download gff for
UFO04733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RA | 67..432 | 1..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:52 Download gff for
UFO04733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RA | 67..432 | 1..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:41 Download gff for
UFO04733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RA | 67..432 | 1..367 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:41 Download gff for
UFO04733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22085606..22085865 | 100..359 | 100 | <- | Minus |
| 3R | 22086233..22086331 | 1..99 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:52 Download gff for
UFO04733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17911328..17911587 | 100..359 | 100 | <- | Minus |
| arm_3R | 17911955..17912053 | 1..99 | 97 | | Minus |
