Clone UFO04738 Report

Search the DGRC for UFO04738

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:47
Well:38
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptrush-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04738.5prime Sequence

616 bp (596 high quality bases) assembled on 2009-06-22

> UFO04738.5prime
CAGTCGACATGGTGGACCGTCTGGTCAACTCGGAGGCCAACACGCGCCGC
ATCGCCTCCGTGGAGAACTGCTTCGGGAGCTCGGGCGTGCCGCTGGCGAT
GCAAGGTCGCGTTCTGGTGGGCGAGGGCGTGCTGACCAAGATGTGTCGCA
AGCGGCCCAAGTCGCGCCAGTTCTTCCTGTTCAACGACATCCTGGTGTAC
GGAAACATAGTGATTGGCAAGAAGAAGTACAACAAGCAGCATATCATGCC
GCTGGAGGAGGTCTCGCTGGAATCGATTGCCGACAACCAGACGTACAGAA
ACGGCTGGTACATCCGCACCACCACCAAGTCGTTTGTGGTGTTTGCGGCC
ACCAGCACCGAGAAGCAGGAGTGGATGGCTCACATCAACAAGTGCGTGGA
GGACCTGCTGCGCAAGAGCGGCAAGAAGCCGGTGGAGAACCACGCCGCCG
TTTGGGTGCCCGACACCGACGCCAGCGTCTGCATGCACTGCAAGAAGACG
CAGTTTACTTTCATCCAGCGCCGGCATCACTGCCGCAACTGCGGCGCTGC
TGTCTCCCCCGGCTGCTCGGTCAAAAATTTCCTGCTTCCTCATCATACTC
CTATGCCTTGCCCCTC

UFO04738.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
rush-RB 2672 CG14782-RB 634..1219 4..589 2825 98.8 Plus
rush-RA 2082 CG14782-RA 683..1268 4..589 2825 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1479234..1479819 4..589 2825 98.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:23:21 has no hits.

UFO04738.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:07 Download gff for UFO04738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 681..1281 1..601 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:59 Download gff for UFO04738.5prime
Subject Subject Range Query Range Percent Splice Strand
rush-RA 681..1281 1..601 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:44 Download gff for UFO04738.5prime
Subject Subject Range Query Range Percent Splice Strand
rush-RA 681..1281 1..601 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:44 Download gff for UFO04738.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1479232..1479832 1..601 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:59 Download gff for UFO04738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1373265..1373865 1..601 97   Plus