UFO04741.5prime Sequence
1115 bp (1009 high quality bases) assembled on 2009-06-30
> UFO04741.5prime
CAGTCGACATGAAGATAATAGCACTCTTAGTATTGGCGAATCTGGGCTTT
GCCCTTAGTAGTAAGGAATATGATGAACACGAAAGGCTGGTGACGTGGAG
ACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGGAAACGCGG
AGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCCGAAGTAAC
CTTGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATACGATGAACA
ACGCCAATTGCTTGAAGATAACATTACTCAGCGCTTGAACACGCTCAGAT
CCCTAATATCATTAAGAAAAGGAGGCAAGAGATGTGTCCGATTCTACCAG
CATCAGGAAAATGAACTTAAGAATGCCTACAAGTTCTCTAATCAGAAAAA
AGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACCACCGGCGA
TACAAGAATATGATTATGATTACTATCTAGGCTATGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
ATATTTGCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGCCACGT
TTAAATCAAACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAAACAT
ATCTCAATAAACCCTTTAGGAAATAGGCAGCTTCACCGTACACGCCACAT
CTTGCGAATATATTGTGTAGAACTGCCGAATCGTCTGGTATTCACTCCAG
GATGAAAACGTTTCAGTTGCTCATGAAACGTGTACAGGGTGAAACCTATC
CCATATACCAGTCAC
UFO04741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17472-RA | 582 | CG17472-RA | 51..527 | 9..485 | 2385 | 100 | Plus |
| CG31680-RA | 527 | CG31680-RA | 30..205 | 9..187 | 355 | 81 | Plus |
| CG31680-RA | 527 | CG31680-RA | 243..391 | 261..409 | 265 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20634678..20635112 | 51..485 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 20639136..20639378 | 51..307 | 845 | 89.5 | Plus |
| 2L | 23513712 | 2L | 20639385..20639523 | 347..485 | 485 | 89.9 | Plus |
| 2L | 23513712 | 2L | 20640434..20640582 | 261..409 | 265 | 78.5 | Plus |
| 2L | 23513712 | 2L | 20640293..20640396 | 84..187 | 250 | 82.7 | Plus |
| 2L | 23513712 | 2L | 20634565..20634607 | 9..51 | 215 | 100 | Plus |
| 2L | 23513712 | 2L | 20640150..20640192 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:03 has no hits.
UFO04741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:08 Download gff for
UFO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17472-RA | 2..485 | 1..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:26 Download gff for
UFO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17472-RA | 44..527 | 1..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:59 Download gff for
UFO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17472-RA | 44..527 | 1..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:59 Download gff for
UFO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20634558..20634607 | 1..51 | 92 | -> | Plus |
| 2L | 20634679..20635108 | 52..481 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:26 Download gff for
UFO04741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20634558..20634607 | 1..51 | 92 | -> | Plus |
| arm_2L | 20634679..20635108 | 52..481 | 100 | <- | Plus |
