UFO04742.5prime Sequence
1133 bp (1017 high quality bases) assembled on 2009-06-30
> UFO04742.5prime
CAGTCGACATGCAGCACATACTACTTCTTACAGGACTGGCGCTGGTAGGC
AGCATTTCCAGGGGAGCCGCCACCGAATCCAACGTGGTCACCTGCGGCTC
CATCCTGAAGCTGCTCAACTCGGACTACGCCTTCCGCCTGCACTCCCACG
ACGTCAAGTACGGATCTGGTTCCGGGCAGCAGTCGGTGACGGGCGTGGAG
CAGAAGGAGGACGTGAACAGCCACTGGGTGATCAAGGCGCAGACCGGCGA
GCTTTGTGAAAGGGGCGAGCCCATCGCCTGCGGATCCACCGTGCGACTGG
AGCACCTGTCCACCAAGAAGAACCTGCACTCGCACCACTTTTCGTCGCCG
CTCTCAGGCGAGCAGGAGGTGTCCGCGTACGGAACGGATGGACTCGGCGA
CACCGGCGACCACTGGGAGGTGGTCTGCTCCAACGAGAACTGGATGCGCA
GTGCCCACGTTAGGCTGCGCCACATCGACACCGGCATGTACCTGGGCATG
TCCGGCCGCTCCTATGGCAGACCCATCTCCGGCCAAATGGAAATCGTTGG
CGTCCACAAGCCGCAGCACGGAACGCGCTGGACCACGGCGGAGGGCCTCT
TTATCGTGCCCAAGGAGAAGAGCTCAACGCACGACGAGTACGCCCACTCG
GAGCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGCAGCCATCACAAACGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CTTGTCGCCTTGCGTATATATTTGCCCATGTGAACCGGGGGGCGAGAGTG
TCCATATTGCACGTTATCAACTGTGACTCACCAGATGCTGAACGAAAACA
TTTCCATACCGTTAGAATGCAGTACCGTAACGC
UFO04742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11999-RA | 904 | CG11999-RA | 127..774 | 9..656 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5353847..5354434 | 656..69 | 2940 | 100 | Minus |
| 3R | 32079331 | 3R | 5354561..5354621 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:49:18 has no hits.
UFO04742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:09 Download gff for
UFO04742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 118..774 | 1..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:06 Download gff for
UFO04742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 118..774 | 1..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:56 Download gff for
UFO04742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 118..774 | 1..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:56 Download gff for
UFO04742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5353847..5354433 | 70..656 | 100 | <- | Minus |
| 3R | 5354561..5354625 | 1..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:06 Download gff for
UFO04742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1179569..1180155 | 70..656 | 100 | <- | Minus |
| arm_3R | 1180283..1180347 | 1..69 | 94 | | Minus |
