UFO04743.5prime Sequence
1013 bp (964 high quality bases) assembled on 2009-06-30
> UFO04743.5prime
CAGTCGACATGGCGCACATGTCCCACATGCTCCAGCAGCCTTCGGGGTCG
ACGCCCTCCAACGTGGGCTCCAGCTCATCGCGCACGATGTCCCTGATGGA
GAAACAAAAGTACATCGAGGACTACGACTTTCCCTACTGCGACGAGAGCA
ACAAATACGAAAAGGTGGCGAAAATTGGCCAAGGCACCTTCGGAGAGGTT
TTTAAGGCTCGCGAGAAAAAGGGCAACAAGAAGTTTGTGGCCATGAAGAA
GGTGCTGATGGACAACGAAAAGGAGGGCTTTCCCATCACGGCTCTGCGAG
AGATCCGCATCCTGCAGCTGCTAAAGCACGAGAACGTGGTGAATCTGATC
GAGATCTGCCGCACCAAGGCCACCGCCACGAATGGTTACAGATCCACCTT
CTATTTGGTCTTTGATTTCTGCGAACACGATTTGGCAGGTCTTCTGTCCA
ACATGAACGTCAAGTTCAGTCTGGGCGAGATTAAGAAGGTTATGCAGCAG
CTTTTAAACGGTTTGTATTACATCCACAGCAACAAGATCCTGCACCGAGA
CATGAAAGCTGCCAACGTGCTGATTACCAAGCATGGCATCTTAAAGCTGG
CTGACTTTGGCTTGGCCCGTGCTTTTAGCATTCCAAAGAACGAGAGTAAG
AATCGCTATACCAATCGCGTAGTAACCTTGTGGTACCGGCCGCCTGAGCT
GCTACTTGGTGACCGCAACTATGGTCCACCCGTGGACATGTGGGGAGCCG
GCTGCATAATGGCCGAGATGTGGACACGCTCGCCCATCATGCAAGGCAAT
ACGGAGCAGCAGCAGCTAACCTTTATCTCGCAGCTATGCGGCTCCTTTAC
GCCGGACGTGTGGCCGGGGGTGGAGGAGCTGGAACCTGTCAAATCCACGC
AGCTGCCAAAGAACCAGAAGCGTCGAGTCAAGGAGCGCTTGCGTCCGTAT
GTCAGGATCAACCGGGCTTTGATCTTATGGACAATTTGCTGATCTTTTGA
TCCAGAAAACGCT
UFO04743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk9-RA | 1476 | CG5179-RA | 137..1122 | 8..992 | 4680 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22636417..22636875 | 992..535 | 2005 | 96.3 | Minus |
| 2R | 25286936 | 2R | 22636942..22637199 | 536..279 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 22637406..22637591 | 193..8 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 22637259..22637344 | 278..193 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:10 has no hits.
UFO04743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:10 Download gff for
UFO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk9-RA | 133..1103 | 8..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:45 Download gff for
UFO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk9-RA | 137..1107 | 8..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:52 Download gff for
UFO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk9-RA | 137..1107 | 8..978 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:52 Download gff for
UFO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22636432..22636873 | 537..978 | 97 | <- | Minus |
| 2R | 22636942..22637199 | 279..536 | 100 | <- | Minus |
| 2R | 22637259..22637343 | 194..278 | 100 | <- | Minus |
| 2R | 22637406..22637591 | 8..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:45 Download gff for
UFO04743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18523937..18524378 | 537..978 | 97 | <- | Minus |
| arm_2R | 18524447..18524704 | 279..536 | 100 | <- | Minus |
| arm_2R | 18524764..18524848 | 194..278 | 100 | <- | Minus |
| arm_2R | 18524911..18525096 | 8..193 | 100 | | Minus |
