UFO04745.5prime Sequence
1104 bp (989 high quality bases) assembled on 2009-06-30
> UFO04745.5prime
CAGTCGACATGAGTGATACGCGTGAGCAGATTCTGGAGCAAATCAAAGTG
CAAGGCGATCTCGTCCGTCAATTGAAAGCAGCGAAGGAGTCGAAGGAGAA
GATCGATGAGGAGGTCGCCCGCCTACTGGCCCTAAAGGCCACTCTTGGCG
GAGATGCCGCCCCCACCAATCAGAAGTTCACGCTAAAGACGCCCAAAGGC
ACACGGGACTATGGTCCTCAGCAGATGACCCTGCGCCAGGGCGTCCTGGA
CAAGATCGTCCAGGTGTTCAAGCGCCACGGCGGCGAAGCCATCGATACGC
CCGTGTTCGAGCTGAAGGAAGTGCTGACGGGCAAGTACGGCGAGGACTCA
AAGCTGATCTACGACTTGAAGGATCAGGGCGGTGAGATCCTATCGATGAG
GTATGACTTGACCGTGCCGCTGGCTCGTTACCTGGCGATGAACAAGATCT
CGAGCATCAAGCGCTACCACATCGCCAAGGTCTATCGACGCGACAATCCG
GCAATGACCAAGGGTCGCTATCGGGAGTTCTACCAATGTGACTTCGACAT
CGCCGGCACCTACGATCCCATGCTGCCGGATGCCGAGTGCGTCAAGATTG
TGTCGGAGATACTGGACACGCTGGACATTGGAGACTATGTGATAAAGCTA
AATCACCGCCAGCTTTTGGACGGCATGTTCCAGGCGTGCGGAGTGCCGGC
GGATAGCTTCCGCACCATCTGCTCAGCGGTGGATAAGTTGGATAAGTCGC
CCTGGGGCGGATGTGCGCAAGGAGATGGTGGATGAGAAAGGTCTGGACGA
GGCAGCAGCGGATCGAATTGGCGAGTACGTGCGACTGAGCGGCGGTGCCG
AGCTGGTGGAACACTGCTGGGCCAACGAGAAGCTCAAGGCTGTGCCAAAT
GCCGTAAAGGGTCTGGAGGGCATGAAGCAGCATCCTTAAGTACTGTTCCA
TATTCGGTCTGGATACCGAGTTACCTTCGATTTGAGTCTGGCCGTGACCT
GGACTAACTACACCGGTGTTAATCTACGAAGGTGTGTCAGGAGAGTCCGC
CACGTGGCATCTCGGCAAACTCCAGCTAACGGAAGCAGGCACGACTGGCT
ACGT
UFO04745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-his-RA | 1978 | CG6335-RA | 163..1219 | 9..1063 | 4960 | 98.5 | Plus |
| Aats-his-RE | 2862 | CG6335-RE | 1138..2103 | 100..1063 | 4505 | 98.4 | Plus |
| Aats-his-RD | 2104 | CG6335-RD | 380..1345 | 100..1063 | 4505 | 98.4 | Plus |
| Aats-his-RE | 2862 | CG6335-RE | 163..255 | 9..101 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18518823..18519253 | 316..746 | 2155 | 100 | Plus |
| X | 23542271 | X | 18517809..18518027 | 100..318 | 1095 | 100 | Plus |
| X | 23542271 | X | 18519322..18519602 | 755..1036 | 1020 | 94.7 | Plus |
| X | 23542271 | X | 18515590..18515682 | 9..101 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:35 has no hits.
UFO04745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:11 Download gff for
UFO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 192..1255 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:51 Download gff for
UFO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 163..1226 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:17 Download gff for
UFO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 163..1226 | 9..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:17 Download gff for
UFO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18515590..18515682 | 9..101 | 100 | -> | Plus |
| X | 18517811..18518026 | 102..317 | 100 | -> | Plus |
| X | 18518825..18519253 | 318..746 | 100 | -> | Plus |
| X | 18519315..18519640 | 747..1069 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:51 Download gff for
UFO04745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18409623..18409715 | 9..101 | 100 | -> | Plus |
| arm_X | 18411844..18412059 | 102..317 | 100 | -> | Plus |
| arm_X | 18412858..18413286 | 318..746 | 100 | -> | Plus |
| arm_X | 18413348..18413673 | 747..1069 | 94 | | Plus |
