UFO04746.5prime Sequence
1121 bp (1004 high quality bases) assembled on 2009-06-30
> UFO04746.5prime
CAGTCGACATGGCTTTGGCAGCGGCACCAACAGCAGGACCTTCGCATGGC
GGCTTGGCATTGACCGTGAGTTCGGCCGGTGGCTACGATGGTACCAATCA
ATACGAGGAGAACGCTGAGCACTTGCGTCAGCTGTTCAGCCAGAGCAAAC
TGGTGTCCTTTAGCATTGCCCACATCGCGTGCTCCGCGGGCAGTAGCAGT
GGCGACAACTATATGTCCGTGGTGAAGCGTGTAACCATCTCCCAGGCAGG
AAAGGATCAGGATCCGGAGCTGGCTGGCAGTGAAATCGTCACGGTCATTG
TGAAGCGACAAATTGCGAGCCTTTCGCGCCGGCAACTCTACCGATGCGAG
GAGGCCTTCAGCAACGAGATCAACGCCTATCGGCACTTGGCGCCCCTATT
AGCTGCCCACAGTCGTCATCAGTTGTTTCCGGTATGCCACATTGCGGAGA
GTCAAGATCGGCGGGATGCGGAAGGTGGAGAACCCATCATCGTGCTTCAG
GACCTCAAAGCCATGGGTTTTCGCATGAAGGATCGTCTGGCGGGCTTGGA
ACTGAGCGACTGCCTTCTAGTGATGAAGAAACTTGCACAACTCCATGCTG
CCTCGCTGGCCGCTCAAGAGCTGGAATCCTCTTCCTTCGCCTTCCATGCT
GATCATCTTCAAGAGATTGTCTACTGCGATGAGGCGACGGACTTTTACGC
CACCATTCTAGACACCTCCGTGCAGCAGGCTCTGGAAAGTCTAGGCGACG
CCAATGCAGACGACTGCTTGACCACGCCCATTCGATTGCTCGAGGAACTT
CGTACCAATCTGTTTGAAAATCTAAAGCACGAGATTAATGCCACTGCGGC
GGCTCCAAACAGTGTGATCTGCCATGGTGACCTTTTGGGTAAACAACATT
ATGTTCCGCTCTGAGCCAGAGGAGGTGATCTTTCTTCGACCTGCAAGGCA
TGCGCAAGTCGTCCGCCTATTTTTGACATTCTCCACTTCATTTACACCAA
GCACGAAGAAGCCACTCATGGGTGGTGCCACGGACGCCCTGCTGGCCGCC
TACTCCAAGCCTTTGATTGAGGAAACTAGGATCCAACTGAGGATACAACC
GCTGCCGAAAGCTTAAGAGCC
UFO04746.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1712 | CG5644-RA | 254..1353 | 9..1111 | 5080 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8977754..8978285 | 1111..577 | 2100 | 95 | Minus |
| 3L | 28110227 | 3L | 8978350..8978640 | 578..288 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 8979348..8979627 | 288..9 | 1400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:01 has no hits.
UFO04746.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:12:52 Download gff for
UFO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 248..1364 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:59 Download gff for
UFO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 248..1364 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:47 Download gff for
UFO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 248..1364 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:47 Download gff for
UFO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8977742..8978283 | 579..1121 | 95 | <- | Minus |
| 3L | 8978350..8978639 | 289..578 | 100 | <- | Minus |
| 3L | 8979348..8979632 | 1..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:59 Download gff for
UFO04746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8970842..8971383 | 579..1121 | 95 | <- | Minus |
| arm_3L | 8971450..8971739 | 289..578 | 100 | <- | Minus |
| arm_3L | 8972448..8972732 | 1..288 | 98 | | Minus |
