UFO04752.5prime Sequence
1154 bp (1033 high quality bases) assembled on 2009-06-30
> UFO04752.5prime
CAGTCGACATGGCGTTCCTACTGCGACAAGTGGCCAGGAGCGGATTGCAA
AGAAATCTAATCCTAATGCGGCATGCAACCGCTTCCACATCCGCGAATCC
CGAACTTAGTGTCCAGGTGAGCGAGAGCTGCTTGAAACGGCTCCGTGAGA
TCTGCGTGGATGGATCTTTCCTGCGTGTGACCGTCGAAGGAGGCGGATGC
TCCGGCTTTCAGTACAAATTCGATTTGGATAAGCAGCTGAACGAGGATGA
CCGACAGTTTGGCGAGGCTGAGGCCAAGGTGGTGATCGATACAGTCTCGC
TGGAGTACTGCAGCGGCGCCACCGTGGACTACCATAGCGAACTAATACGC
GCCGGTTTCCGGATGGTGGCCAATCCGCTGGCGGAACAGGGCTGCTCCTG
CGGCTCCTCCTTCTCAATCAAATTGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAACTGGTGAAACTCACCCAGGATTGGCTGAGACGAAAACATATTCTCA
ATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTACACGCCACATCT
TGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTATTCACTCCAGA
GCGATGAAACGTTCAGTTTGCTCATGGAAACGGTGTAACAGGTGAACACT
ATCCATATCACCAGCTCACCGTCTTTTCATTGCAACGAAATCGGATGAAA
CATCACAGCGCCAGATGTGATAAGCGAATAACTTGCTATTTCTTACGCTT
AAGC
UFO04752.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13623-RB | 563 | CG13623-RB | 96..512 | 9..425 | 2085 | 100 | Plus |
| CG13623-RA | 725 | CG13623-RA | 258..674 | 9..425 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24529824..24530198 | 425..51 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 24530258..24530301 | 52..9 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:27 has no hits.
UFO04752.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:14 Download gff for
UFO04752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..682 | 9..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:27 Download gff for
UFO04752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..682 | 9..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:50 Download gff for
UFO04752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..682 | 9..434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:50 Download gff for
UFO04752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24529824..24530196 | 53..425 | 100 | <- | Minus |
| 3R | 24530258..24530301 | 9..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:27 Download gff for
UFO04752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20355546..20355918 | 53..425 | 100 | <- | Minus |
| arm_3R | 20355980..20356023 | 9..52 | 100 | | Minus |
