UFO04753.5prime Sequence
1133 bp (1028 high quality bases) assembled on 2009-06-30
> UFO04753.5prime
CAGTCGACATGCGAAAGTTTCTCGGTCTGCTGCTCACCGTGAGCTGTGTT
CTGATCGCCCGCGGCGGCGTCATGGAGATTGAAGTGCCGCAGGAAGTCAC
GGAAGGTCCTGGGGATGTCTCTCAAAGCTCAGCGGAAATAAGCCATGCGA
AGGACAGTGTTAGCAACTCAACCCTGAAGTTGGTTCACGTGCTTTTTCGT
CATGGTCCTCGAACTCCAGTGAGCACTTATCCCAACGATCCGTATATCAA
CGAAACCTACGAGCCCTTCGGTTGGGGAGCACTCACCAATGGTGCTAAAG
TGGAGCTGTATAAAATAGGCAAGCAACTGCGGCAGCGCTATAAAGATTTC
CTCCCGGCGTATTATCAGCCTGACGCGATCCGTGCCCAATCTTCGGAGTC
ACCGCGCACCTTGATGTCTATGCAAATGGTCCTCGCCGGACTCTTTCCAC
CGGAGAACACTCCCATGGAGTGGAACCAGCTGCTCAATTGGCAGCCCATA
CCCATTGTGATGGAACCAGAGGAAACTGATGTGCACATTAGAATGAAGGC
ACCCTGCCCCCGATACGATGAGTCTGTTCTGGAGGTAATAGAACTTCCCG
AGGTCAAAAAGCTGCATGCCGAGAGCTCGGATTTACTACGCGAACTGACC
ACTCACACCGGACTCAATATTACCCATGCCCACGATGTCACCAATGTGTT
CATCACCCTGCTCTGTGAACAGACTTTCGGCCTGCAGTTGCCCTCGTGGA
CCAATGACTACTTTCCGGAGAAGATGCTACCCTTGGCTGAAAAGTCATAT
GTCTACGATGCCTATACGACCGAGCAGCGCAAAATGAAAGGGGGTTTCTT
CGTGGAGCTGCTGTTGAAGCAAATGCAGACAGGATCTCCGGAGCATTGAA
GCCAGCCAATCGCAGATGTTCCTTTCCTGCGTCACGATTGGACCATCACA
AATGTGCTATCCGCCTTGAATGTTTGGGAGGCTCAGATGCCCCGCTTTTC
GTCGTTGATTGCATTTGAGCTGCATCAAAACCGCAAACTGGGGAGTATTT
TCTGAATCTACTTCAACCGATTCCCACAAGGGCCTCAGCAGCTGCCGATT
CCGCTGCGAAACGTCCATGCAGTATGACTACAG
UFO04753.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9451-RB | 1592 | CG9451-RB | 79..1190 | 9..1109 | 5240 | 98.6 | Plus |
| CG9451-RA | 1387 | CG9451-RA | 79..1190 | 9..1109 | 5240 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19498608..19499186 | 1102..533 | 2440 | 97.6 | Minus |
| 3L | 28110227 | 3L | 19500538..19500720 | 191..9 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 19499256..19499414 | 533..375 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 19499622..19499722 | 291..191 | 505 | 100 | Minus |
| 3L | 28110227 | 3L | 19499474..19499558 | 375..291 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:46 has no hits.
UFO04753.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:15 Download gff for
UFO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9451-RA | 93..1204 | 9..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:17 Download gff for
UFO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9451-RA | 79..1190 | 9..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:14 Download gff for
UFO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9451-RA | 79..1190 | 9..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:14 Download gff for
UFO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19498599..19499185 | 534..1109 | 97 | <- | Minus |
| 3L | 19499256..19499414 | 375..533 | 100 | <- | Minus |
| 3L | 19499475..19499558 | 291..374 | 100 | <- | Minus |
| 3L | 19499623..19499721 | 192..290 | 100 | <- | Minus |
| 3L | 19500538..19500720 | 9..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:17 Download gff for
UFO04753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19491699..19492285 | 534..1109 | 97 | <- | Minus |
| arm_3L | 19492356..19492514 | 375..533 | 100 | <- | Minus |
| arm_3L | 19492575..19492658 | 291..374 | 100 | <- | Minus |
| arm_3L | 19492723..19492821 | 192..290 | 100 | <- | Minus |
| arm_3L | 19493638..19493820 | 9..191 | 100 | | Minus |
