UFO04761.5prime Sequence
1098 bp (966 high quality bases) assembled on 2009-06-30
> UFO04761.5prime
CAGTCGACATGGATGTGGATAATGGCGAGGGGCAGGTGCAGGTGCACCTG
AAGACCAAGCAGGAGCATTATGCCGTGCCTGATGTGCCGTACGCCATCGA
TGGCACCGTCACCACCGTGGAACTAAACACATTCGTGAACGCACTGTTGC
GTCAAAAAGATGGCTCTTCCGACACTGACTTCGACTTCCTGGTGTTCGAT
GAGTACCTGCGCGGCCGGCTGTGCGATCACCTGCGCGAGAAAGCCATCAG
TTTCGAGGACGCCATCGAGATCGAGTATGTGGAGCGGTTCCCGGCGCCAG
AGCCACAGGATTGCCTGCTGCACGACGACTGGGTGTCCGCGGTGAAGGCT
AGAGGAAAGTGGATCCTCTCTGGGTGCTACGACAACACCCTGAATTTGTG
GACCAACAAGGGCAAGCACATTCTCACTATTTCTGGTCACACGGCGCCCA
TCAAGGCGGTGGACTGGATATCGCTGGACGAGGAGACGGGACGTTTTGTG
TCCACATCGCAGGATCAGACCGCCATGCTGTGGCAGTGGAACGTGGGCTC
CAACTCGGTGGAATGTGTCTCCGTGTGCAAGGGCCACGAGCGAGGCGTCG
ACAGTGTCAGCGTGAGTCCGGATGGTCTGAGATTTGCCACGGGCTCTTGG
GACACGATGTTGAAGGTGTGGTCAGCAGAGCTGGACGATGCAGTCGAGGG
CAGCTCAAAGCGGATGAAAGAGAGCGGTGTGAGAACCCCCAAAATTACGC
TGCAGGACATCGTGAGAGCGTATCAGCCGTGCAGTGGATGGATGCTACCA
CTCTGCTAACTGGCAGCTGGGATCACACACTCAAGTGTGGATCTGAGTCT
TGAGGGCATCAAGACCGAAATATCCACCAACAAGTCCATATTCGATGCGA
GCTACTCAAAGCTGAATCGGCTGATACTGACTGCTTCGGCGGACAAGAAT
CTGCGGCTTTATGATCCTAGACAAACCATGGATCAGTGTAAGGAATACCT
ATCTTGGGACACATGCTGGGTGCAGACGTCATGTGTGTCCACCCACGGAA
GGATCTATTTGTCTCGGGCTTATGACAACAGAACCAGCCTGTGAACTG
UFO04761.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6724-RA | 1535 | CG6724-RA | 220..1309 | 9..1088 | 4855 | 97.3 | Plus |
| CG6724-RB | 1529 | CG6724-RB | 220..1303 | 9..1088 | 4755 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10768948..10769613 | 734..69 | 3225 | 98.9 | Minus |
| 2L | 23513712 | 2L | 10768652..10768890 | 970..735 | 1030 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10769675..10769733 | 67..9 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:49:57 has no hits.
UFO04761.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:20 Download gff for
UFO04761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 226..1331 | 1..1098 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:30 Download gff for
UFO04761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..1319 | 1..1098 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:12 Download gff for
UFO04761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..1319 | 1..1098 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:12 Download gff for
UFO04761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10768644..10768890 | 735..977 | 97 | <- | Minus |
| 2L | 10768948..10769614 | 68..734 | 98 | <- | Minus |
| 2L | 10769675..10769739 | 1..67 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:30 Download gff for
UFO04761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10768644..10768890 | 735..977 | 97 | <- | Minus |
| arm_2L | 10768948..10769614 | 68..734 | 98 | <- | Minus |
| arm_2L | 10769675..10769739 | 1..67 | 94 | | Minus |
