UFO04769.5prime Sequence
1117 bp (991 high quality bases) assembled on 2009-06-30
> UFO04769.5prime
CAGTCGACATGGCGTTCATTTCGAAAGACTTTCGGTCGCCGGGGGAAACT
TGGATCAAAACCGATGGCGGCTGGGAGCGTTCCAAGGTGCTCGAGTGCGG
CGGAAAGCGGAAGCGGCACCATTCAGAGGGCAGCAGCAGCTACCAGGACA
GCGACAGTTCGGAGGAGGAGGCGGTGATGCCGCCGCATTATCACATCACC
ATCCGGTGTACCAGAGAGATAGCCGGGTTTAATGGTCTCAGTGAGGCTGT
GAAGCGTCTGGATTTCAGGCGATCTGTGCGGGATCGCAAGCGGTTCCACT
ACATATGCGCCTTCCTGCTGCTCGTGTCCAACAAGGGTATTGCCAGTCTG
CCAGGCAGTGCTCAGCGCCAGCTACTCCAAATGGTCGAGGAGGTGGCCTC
GCATGTAAATGACAGCCAGCAGCATCCGAATGTGCTGCGCGGCCTGGCCC
TGAAGCTGGAGCACATTGTCAGCCAAGAGAACCAGAAGTGCTGGGGCAAG
CCGCTGGGCAGCACGTACCTGTGGAAGGAGCACATGGCCACCATCAAGCG
CATCCAGCGCGTGGCCAGCCAGATCGAAATCCGCGAGCCCGATCCGGAGG
CCAAGCCAAAGCTGCACGAACTGCCGGAGGAGTGTGTGCGGGAGATCATC
CTGTGCATAGCCGACCATCGGGACCTGGAGTCGGCCGCCGAGGCCTGGGA
GACCATGGCCAAGCTGGTATCCGAGCAGCGCATCTGGCGCGAACTGACAC
GCTTTCACTTCAACCAGCGCCAGATCCACACCATTCTGGACCTGGACAAG
TTTAAGCAGATGGGCGAGATCAAGGACTGGAAGCAGATCTATCATCAACT
ACGACGCACCTATGGCGTCAACGATGATTACCAGTTCGCCGAGGTGCTGG
GCCCTGTGCCGCTCCTGCTGCTGCCTGTTCTTGGCCGTCGGATGGACACC
CGTGCATCGTTCGATCAGAGTTCCGGACTACAAGCGGCGCTTTGAGAGGC
CGGTGTTCAGTTGGCTCCTGGCCAACCAGTCGCCGCCCAGTTTCTAGTTA
CTTCTCGTGGCAGCTTTCTAGAACATTCGATTGGCGCGCGGCCAGGTATG
CTTAATCCATACTATAT
UFO04769.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11658-RE | 2056 | CG11658-RE | 395..1445 | 9..1058 | 4925 | 98.4 | Plus |
| CG11658-RD | 2068 | CG11658-RD | 407..1457 | 9..1058 | 4925 | 98.4 | Plus |
| CG11658-RC | 2563 | CG11658-RC | 307..1357 | 9..1058 | 4925 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11700734..11701175 | 1030..586 | 1875 | 97.3 | Minus |
| 3L | 28110227 | 3L | 11701482..11701772 | 405..115 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 11701238..11701420 | 587..405 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 11707304..11707411 | 116..9 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:53:02 has no hits.
UFO04769.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:16 Download gff for
UFO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 317..1367 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:26 Download gff for
UFO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 307..1357 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:44 Download gff for
UFO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 307..1357 | 9..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:44 Download gff for
UFO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11700702..11701173 | 588..1058 | 96 | <- | Minus |
| 3L | 11701238..11701419 | 406..587 | 100 | <- | Minus |
| 3L | 11701482..11701771 | 116..405 | 100 | <- | Minus |
| 3L | 11707305..11707411 | 9..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:26 Download gff for
UFO04769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11693802..11694273 | 588..1058 | 96 | <- | Minus |
| arm_3L | 11694338..11694519 | 406..587 | 100 | <- | Minus |
| arm_3L | 11694582..11694871 | 116..405 | 100 | <- | Minus |
| arm_3L | 11700405..11700511 | 9..115 | 100 | | Minus |
