UFO04772.5prime Sequence
1104 bp (984 high quality bases) assembled on 2009-06-30
> UFO04772.5prime
CAGTCGACATGAAGTTACTTGAGCCTCAGACGACCATTAGTCCTGAACCG
GACATACTGCATCCGGACGACGGTCAATACATATGGCTGCCAATTTCCGT
GCTCGTTGGCATTTTCGTTCTGGCTGCACTGGTCTACGCCATGTCACGTA
GTCGCTGTCGGAATTCCTGGGATTGCCTAAAGAGCAGGAAGGCTCCGCGA
AGTGGATACATCAATGTGGATGAGGAGGATTCCGATGTGCCCATGGACTG
CGGAGATGAACTGGGAGATCAAAGGACTACTGCTACTCTCCTCACTGGTC
GCCTCCACATTCAGGATGGAGCGAATAACGCCTCCAATGCCGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAAGGGAAATAGGCCAGGGTT
TTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGA
AATCGTCGTGGTATTCACCTCAGAGCGATGAAACGTTTCAGTTGCTCATG
GAAACGGGTGTAACAGGGTGAACACTATCCATATCCACAGCTTCACGTCT
TCATGCCATACGAAATCGGATGGGCATCATCAGGCGGGCCAGATGTCAAT
AAAGGCGATAAACTTGGCTATTTTCCTTACGGCTGAAGCCGTATATTCAG
CTGA
UFO04772.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5039-RA | 719 | CG5039-RA | 95..427 | 9..341 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25678968..25679159 | 127..318 | 945 | 99.5 | Plus |
| 3R | 32079331 | 3R | 25678777..25678901 | 9..133 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:49:26 has no hits.
UFO04772.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:18 Download gff for
UFO04772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5039-RA | 66..398 | 9..341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:11 Download gff for
UFO04772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5039-RA | 95..427 | 9..341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:59 Download gff for
UFO04772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5039-RA | 95..427 | 9..341 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:59 Download gff for
UFO04772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25678777..25678899 | 9..131 | 100 | -> | Plus |
| 3R | 25678973..25679158 | 132..317 | 100 | -> | Plus |
| 3R | 25679214..25679237 | 318..341 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:11 Download gff for
UFO04772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21504936..21504959 | 318..341 | 100 | == | Plus |
| arm_3R | 21504499..21504621 | 9..131 | 100 | -> | Plus |
| arm_3R | 21504695..21504880 | 132..317 | 100 | -> | Plus |
