UFO04776.5prime Sequence
1126 bp (1036 high quality bases) assembled on 2009-06-30
> UFO04776.5prime
CAGTCGACATGAAACCCGAACGTAATGTGATGATAGCGGCCACCGGAAGT
GTGGCCACCATTAAGTTAGCCCAGTTAATCCGAGAGCTCTCCGACGAGCG
CCTACCCTTTAAGTTCCACCTGAAAGTACTTATTACCGAAGCAGCCAAAC
ACTTCTTTGAACTGGAGCAGATTCCCGAAAATGTACCCATTTACCACAAT
CGCGACGAGTGGATCACCTGGAACAAGCGAGGAGATCCTGTACTCCACAT
AGATCTAGGCAAGTGGGCGGATTTGTTGGTAATAGCCCCACTCAGCGCAA
ACTCTCTGTCCAAAATGGCCACCGGGATTTGCGATAATATCGTCATGTGT
GTGGTGCGGGCCTGGGACCTTGAGAAGCCGCTGCTCTTTGCACCTGCGAT
GAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGATCGACAAGC
TGACCAGTTGGGGCTACAAGGAGATACCCTGCATATCCAAGACTCTGATG
TGCGGTGATACTGGCAACGGCGCCATGGCGGAGGTACCCACAATTGTGGA
AGCGGTGTTATCCGCCTTTCAGCCGATTAAAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATT
TGCCCATGGTGAAACGGGGCGAAGAAGTTGTCATATTGCCACGTTTAATC
AAACTGTGAACCCACCCAGGATTGGCTGAAACGAAAAACATATCTCATAA
CCCTTTAGAAATAGCAGTTCACGTACCGCCCATCTTGGCATAATTGGTGA
ACTGCGATCGTCTGCATTACTCAGCG
UFO04776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42496-RB | 1117 | CG42496-RB | 469..1042 | 8..581 | 2870 | 100 | Plus |
| CG42496-RA | 1064 | CG42496-RA | 416..989 | 8..581 | 2870 | 100 | Plus |
| Ppcdc-RB | 1117 | CG30290-RB | 469..1042 | 8..581 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21692432..21692689 | 324..581 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 21691995..21692170 | 8..183 | 880 | 100 | Plus |
| 2R | 25286936 | 2R | 21692234..21692375 | 183..324 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:20 has no hits.
UFO04776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:32 Download gff for
UFO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30290-RA | 402..984 | 1..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:55 Download gff for
UFO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppcdc-RB | 465..1047 | 1..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:00 Download gff for
UFO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppcdc-RB | 465..1047 | 1..589 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:00 Download gff for
UFO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21692432..21692694 | 324..589 | 98 | == | Plus |
| 2R | 21691991..21692170 | 1..183 | 97 | -> | Plus |
| 2R | 21692235..21692374 | 184..323 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:55 Download gff for
UFO04776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17579496..17579675 | 1..183 | 97 | -> | Plus |
| arm_2R | 17579740..17579879 | 184..323 | 100 | -> | Plus |
| arm_2R | 17579937..17580199 | 324..589 | 98 | == | Plus |
