UFO04778.5prime Sequence
1127 bp (1014 high quality bases) assembled on 2009-06-30
> UFO04778.5prime
CAGTCGACATGGCTCCTACCGCCAAGACCAACAAGGGTGATACCAAGACC
GCTGCCGCTAAGCCAGCGGAGAAGAAGGCCGCTCCCGCAGCCGCCGCCGC
CAAGGGCAAGGTGGAGAAGCCGAAGGCTGAGGCCGCCAAGCCCGCCGCCG
CCGCGGCCAAGAACGTGAAGAAGGCGTCCGAGGCGGCCAAGGATGTAAAG
GCAGCCGCCGCTGCTGCCAAGCCCGCGGCAGCCAAGCCCGCAGCTGCCAA
GCCCGCCGCCGCTTCCAAGGATGCCGGAAAGAAGGCTCCCGCTGCCGCTG
CTCCCAAGAAGGACGCCAAGGCTGCTGCTGCTCCGGCTCCCGCCAAGGCT
GCTCCGGCCAAGAAGGCTGCCTCCACGCCTGCTGCCGCTCCCCCAGCAAA
GAAGGCTGCTCCCGCCAAGGCCGCAGCCCCGGCTGCTGCTGCTCCCGCTC
CGGCTGCAGCTGCTCCTGCTGTCGCCAAGCCCGCGCCTAAGCCGAAGGCA
AAGGCTGCCCCAGCTCCCAGCAAGGTGGTCAAGAAGAACGTGCTGCGTGG
CAAGGGACAGAAGAAGAAGAAGGTCTCGCTGCGCTTCACTATCGACTGCA
CCAACATTGCTGAGGATAGCATCATGGATGTGGCCGACTTCGAGAAGTAC
ATCAAGGCCCGCCTTAAGGTCAACGGCAAGGTGAACAACCTGGGCAACAA
CGTCACCTTCGAGCGCTCCAAGCTGAAGCTCATTGTCAGCTCCGACGTTC
ACTTTTCCAAGGCATACCTCAAGTACTTGACCAAGAAGTACCTGAGAAGA
CAGTCTGCGCGACTGGATCCGTGTGGTGGCCCAACGAAAAGGACTCGTAC
GAGCTGCGCTACTTCAGATCAGCTCCAACGACGATGAGGACGACGATGCC
GAGGCAGCTTTCTAGACCATTCGTTTGGCGCCGCGGGCCCAGGTAAGTGG
TCATAATCATGATCATAATCATATCATAATCACCACCTAGCCTAAGAGGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACATAAAAACGCCCGGCGGCA
ACGGAGCGTTCTGTACAATTCGATGGGAGTCGGAGGTCTTCTGGATCTTC
ATGGAGTCCAGGCGAGCTCGGATATCC
UFO04778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 1100 | CG7434-RA | 36..932 | 9..903 | 4390 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 764301..764922 | 642..21 | 3110 | 100 | Minus |
| X | 23542271 | X | 762728..762991 | 903..642 | 1125 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:12 has no hits.
UFO04778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:18 Download gff for
UFO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 37..941 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:21 Download gff for
UFO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 28..932 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:17 Download gff for
UFO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 28..932 | 1..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:17 Download gff for
UFO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 762728..762991 | 642..903 | 98 | <- | Minus |
| X | 764302..764922 | 21..641 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:21 Download gff for
UFO04778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 656761..657024 | 642..903 | 98 | <- | Minus |
| arm_X | 658335..658955 | 21..641 | 100 | <- | Minus |
