UFO04779.5prime Sequence
1123 bp (1000 high quality bases) assembled on 2009-06-30
> UFO04779.5prime
CAGTCGACATGAGGGAAATCGTTCACATCCAAGCTGGTCAGTGCGGCAAC
CAAATCGGCGCCAAGTTCTGGGAGATCATCTCCGATGAGCATGGCATCGA
TGCCACCGGCGCCTACCACGGTGACAGCGACCTGCAGCTGGAGCGCATCA
ATGTGTACTACAATGAGGCGTCCGGTGGCAAGTACGTGCCCCGCGCTGTC
CTTGTCGATCTGGAGCCCGGCACCATGGACTCTGTGCGATCGGGACCTTT
CGGCCAGATCTTCAGGCCCGACAACTTTGTGTTCGGCCAGTCGGGTGCCG
GCAACAACTGGGCCAAGGGTCATTACACAGAGGGTGCTGAGCTGGTGGAC
TCAGTGCTCGATGTTGTCCGCAAGGAGGCCGAATCCTGCGACTGCCTGCA
AGGCTTCCAACTCACACACTCCCTTGGCGGCGGCACTGGCTCCGGTATGG
GAACCCTGCTGATTTCCAAGATCCGCGAGGAGTACCCCGACAGGATCATG
AACACATACTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACCGTTGTGGA
GCCCTACAACGCCACCCTGTCGGTGCACCAGCTGGTCGAGAACACGGACG
AGACCTACTGCATCGACAACGAGGCTCTCTACGATATCTGCTTCCGCACC
CTCAAGCTGACGACACCCACATACGGTGACCTGAACCATCTTGTCTCCCT
GACCATGTCCGGCGTAACCACCTGCCTCCGATTCCCCGGCCAACTGAACG
CTGATCTCCGCAAGCTGGCCGTCAACATGGTGCCCTTCCCACGTCTTCAC
TTCTTCATGCCCGGCTTCGCTCCCCTGACCTCCCGAGGATCCCAGCAGTA
CCGCGCCCTCACCGTGCCCGAGCTGACCCAGCAGATGTTCGATGCCAGAA
CATGATGGCCGCCTGCGACCCACGCCACGGACGCTACCTTACCGTCGCCG
CCATCTTCCGTGGACGCATGTCCATGAAGGAGGTCGACGAGCAGATGCTG
ACATCAGAACAAGAACAGCTTCCTACTTCGTCGAATGAATCCCACCACGT
GAGACGGCGTGTGCGAATCCGCCCGTGCTGAAAGTCCGCACTTCATCGAA
TTCCATGCATCAGACGTCAAGCC
UFO04779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub56D-RB | 1596 | CG9277-RB | 112..1175 | 9..1066 | 5090 | 99 | Plus |
| betaTub56D-RA | 1701 | CG9277-RA | 274..1280 | 66..1066 | 4805 | 98.9 | Plus |
| betaTub60D-RB | 2515 | CG3401-RB | 202..1253 | 9..1043 | 2730 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19447767..19448748 | 1043..64 | 4700 | 99.5 | Minus |
| 2R | 25286936 | 2R | 24311194..24311837 | 402..1043 | 1920 | 87.6 | Plus |
| 3R | 32079331 | 3R | 9409002..9409600 | 999..402 | 1715 | 86.1 | Minus |
| 3R | 32079331 | 3R | 9409679..9410046 | 382..15 | 805 | 81.2 | Minus |
| 3R | 32079331 | 3R | 27968929..27969185 | 960..705 | 755 | 87.2 | Minus |
| 3R | 32079331 | 3R | 27972919..27973151 | 532..300 | 565 | 82.8 | Minus |
| 2R | 25286936 | 2R | 24310905..24311136 | 169..400 | 545 | 82.3 | Plus |
| 3R | 32079331 | 3R | 27969656..27969829 | 702..529 | 465 | 84.5 | Minus |
| 3R | 32079331 | 3R | 27974107..27974344 | 301..64 | 365 | 76.9 | Minus |
| 2R | 25286936 | 2R | 19451433..19451489 | 65..9 | 285 | 100 | Minus |
| 2R | 25286936 | 2R | 24310720..24310832 | 64..176 | 220 | 79.6 | Plus |
| 3R | 32079331 | 3R | 27969439..27969535 | 642..546 | 215 | 81.4 | Minus |
| 3L | 28110227 | 3L | 6531600..6531723 | 697..820 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:05 has no hits.
UFO04779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:19 Download gff for
UFO04779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RB | 129..1180 | 9..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:38 Download gff for
UFO04779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RB | 112..1163 | 9..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:20 Download gff for
UFO04779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RB | 112..1163 | 9..1055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:20 Download gff for
UFO04779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19447752..19448746 | 66..1055 | 99 | <- | Minus |
| 2R | 19451433..19451489 | 9..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:38 Download gff for
UFO04779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15335257..15336251 | 66..1055 | 99 | <- | Minus |
| arm_2R | 15338938..15338994 | 9..65 | 100 | | Minus |
