UFO04780.5prime Sequence
1107 bp (980 high quality bases) assembled on 2009-06-30
> UFO04780.5prime
CAGTCGACATGCTTGTGAAGTCATTCAGATCGGCCCTGGTTGCCTGCCTG
ATCACCCTTGTGCCTTGCGGAAGTGCTCAAGCATACATCGCGAAGCCGAC
ATCTCCGCAGGGATATCAGGATGTCAACGGCGTGTGGCAAAGCTCTTTCG
TTTGTCAAACAGGATATCAATTGAAAGCGGATGGAAAATGTTATCCACAG
ACTAACAAAACGTGCGGGCCTGGATACTTTCTTAGCATTGATGAACTATG
CTATCGTACGAATCCTGAGCCTTGCCCGCTTGAATCGACGACCACTACTA
CTACGACAACAACAACAACAACAACAGAGCCCACTACCACAACAACAACG
GCAGAGCCCACTACCACAACAACAACAACAGAGCCCACTACCACAACAAC
AACAACAGAGCCCACTACCACAACAACAACAACAGAGCCCACTACCACAA
CAACAACAACAACAACTGCGCCTCCCGTCATTACAGAACTGACTCGCTGT
CCACCGGGATCGATTTACTTCGACTCGCAGTGCAGGAAAATCGTCTGTTC
GGAGGGTGAATATAAGGCTGGCCGTTGCATTTCATTGGCATGCCCAGCGG
GAACCGTGTGGTATCAAAAACGCTGCCAACAACCGGGATTTATCACCACT
ATCCTTGAGATTGACAATGTGATCCACAATGAGCACAAGTACTCGGTGAC
CAGCGAAAATATAAATCGTGTGGAGTACATTACATCCGCACCCTATGATC
CCGATAACGACAAGAGCTATGACTATACTATAGATAACATCGTAGCCACA
ACAACAACCAGACGTCCCTGGATATACCCCAGTTTGAGGCCATCTACGGA
ACAGTCGGCGGCTAATGAAGTCTTTCCGGGGCGTCATCCTCCACCGCAAT
GCTGTTTTGTAAGAGCCCTCGCATCTGCATCACTAATGCCGCCCAACTGG
GTGGTGCTCCACAAGAGAAAAATTCTGCCAAATCCAAAGTCTGCCGGGCC
CCGGTGGTTAATCTCAAGCCACCGAAGGTCGGATATTGAACGAAAAACGC
GAACCGATGGTCATGCCGCCATCTTCACTTCTGCTCAGCCAGCCGGAATG
CAAGGAA
UFO04780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6912-RA | 1428 | CG6912-RA | 80..1182 | 9..1106 | 4875 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15135578..15136393 | 1036..222 | 3590 | 96.8 | Minus |
| 3R | 32079331 | 3R | 15136842..15136925 | 92..9 | 420 | 100 | Minus |
| 3R | 32079331 | 3R | 15136709..15136780 | 163..92 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 15136471..15136533 | 223..161 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:54 has no hits.
UFO04780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:21 Download gff for
UFO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6912-RA | 52..1132 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:59 Download gff for
UFO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6912-RA | 52..1132 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:51 Download gff for
UFO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6912-RA | 76..1156 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:51 Download gff for
UFO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15135530..15136392 | 223..1083 | 96 | <- | Minus |
| 3R | 15136472..15136531 | 163..222 | 100 | <- | Minus |
| 3R | 15136710..15136779 | 93..162 | 100 | <- | Minus |
| 3R | 15136842..15136929 | 1..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:59 Download gff for
UFO04780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10961252..10962114 | 223..1083 | 96 | <- | Minus |
| arm_3R | 10962194..10962253 | 163..222 | 100 | <- | Minus |
| arm_3R | 10962432..10962501 | 93..162 | 100 | <- | Minus |
| arm_3R | 10962564..10962651 | 1..92 | 95 | | Minus |
