UFO04782.5prime Sequence
1062 bp (994 high quality bases) assembled on 2009-06-30
> UFO04782.5prime
CAGTCGACATGGTCAAGGAGAAGCCCAACTCGACTCGCATCTACGACAAG
GATGGATTTAGGCGCCGGGCTGCTTGTATTTGCGTGAAATCGGAGAATGA
GGCGGAGGTACTCTTGGTAACCTCATCTCGTCGCCCGGAGTTGTGGATCG
TTCCAGGAGGCGGCGTTGAACCAGAAGAGGAGTCATCGGTGACAGCCGTG
CGCGAAGTGCTCGAAGAAGCCGGCGTGGTTGGCGATCTGGGTCGTTGTCT
CGGTGTATTCGAGAACAATGACCACATGCATCGCACCGAGGTGTTCGTGA
TGAACGTGACTCAGGAACTGGACGAGTGGGAGGATTCGCGGAGCATCGGT
CGCAAGCGCCAGTGGTTCACCATCGATGATGCACTCTCGCAGCTGGCGCT
GCATAAGCCGACGCAGCAACACTATCTGATGCAGCTGCAGCACTCGAAGA
CGCTGGACAACACGAATCGCGTGGTGAACGCCACGCATCCGCCCAAGTTG
ACCAATGCCGCCACCCCAGCCGCATCTCCCACTACGGCAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
CGGCATGATGAACCTGATTCGCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCATGGTGAAACGGGGCGAGAGTGTCCATATTGGTCAGT
TTAATCAAAACTGGTGAACCTCACCCAGGATGGCTGAGACGAAAACATAT
TCTCATAACCTTTAGGGAAAGGCCAGGGCTTTCTACGATAACCGCCCAAC
TTCTTTGGCGAT
UFO04782.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aps-RC | 2744 | CG6391-RC | 854..1386 | 7..539 | 2665 | 100 | Plus |
| Aps-RB | 2364 | CG6391-RB | 1145..1677 | 7..539 | 2665 | 100 | Plus |
| Aps-RA | 2565 | CG6391-RA | 677..1207 | 9..539 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10896134..10896411 | 539..262 | 1390 | 100 | Minus |
| 3L | 28110227 | 3L | 10896469..10896626 | 263..106 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 10896777..10896877 | 109..9 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:32 has no hits.
UFO04782.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:12 Download gff for
UFO04782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aps-RB | 1161..1706 | 1..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:05 Download gff for
UFO04782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aps-RB | 1137..1682 | 1..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:50 Download gff for
UFO04782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aps-RB | 1137..1682 | 1..544 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:50 Download gff for
UFO04782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10896129..10896409 | 264..544 | 99 | <- | Minus |
| 3L | 10896469..10896624 | 108..263 | 100 | <- | Minus |
| 3L | 10896779..10896885 | 1..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:05 Download gff for
UFO04782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10889229..10889509 | 264..544 | 99 | <- | Minus |
| arm_3L | 10889569..10889724 | 108..263 | 100 | <- | Minus |
| arm_3L | 10889879..10889985 | 1..107 | 96 | | Minus |
