UFO04785.5prime Sequence
1063 bp (954 high quality bases) assembled on 2009-06-30
> UFO04785.5prime
CAGTCGACATGAAGTATACCATTCTTATTTTGGCTTTGGGCCTGTTTTGC
GTAAATGCATTGGTGGCTCCTGTTCCCAGCGCCCTGGACTCTTCGTCAGA
ACTGGACGATGTGACCGATGGTAGCTTGGAGGTGGAGGACTTTGGCGTGC
TGAGTACGACCTACAAATCCCTAAAGATCGCTCTGCGAAGCATCAAGGGA
CTCAATTGCATAATCAAGTGGGTGGCGGGCATCAAGGACAGTGCGACCCA
ATTTAACACGGACGTGGTCGTGTGCGGCGTCACCGCCAGCAAGGATGTGA
CCAAATTGATCAACGCCAACAATAAGATCCTCAGCACTTGCAACGACCTC
ATCAATCTGAGGTCCAACACTTGCCCCCAAACGGACGACGAGGAGACGAA
GGTCTCTGGCAGCTGCTTTGTTAAGACTCTGCGCAAGGTGTGGTCCCTAA
AGAAGCAAGTGGACAATGCCATCAAGCTGGCCAAGAAGATCCCGCAAACC
GGTCCCAATGCCGTCGCCTGTGTCTCCGATGCCGTCAACACCCTGACCAC
CTACTACACCGCCTTTCCCCAGAACATCATCAGCTGCTCCAAGCTGACTT
CTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCCGACATGTAG
CATCACAAACGCATGATGACTGATCGGCAGCGCATCAGCACTGTCGCTGC
GTATATATTTGCCCATGTGAAACGGGGCGAGAGTGTCATATGCCACGGTT
TATCAACTGTGACTCACCAGAATGCTGAACGAAAACATTTCATACTAGCA
ATGCAGTTACGTA
UFO04785.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8661-RA | 677 | CG8661-RA | 27..621 | 8..602 | 2975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17283818..17284369 | 602..51 | 2760 | 100 | Minus |
| X | 23542271 | X | 17284428..17284474 | 54..8 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:50:53 has no hits.
UFO04785.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:22 Download gff for
UFO04785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8661-RA | 4..604 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:06 Download gff for
UFO04785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8661-RA | 21..621 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:41 Download gff for
UFO04785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8661-RA | 21..621 | 1..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:41 Download gff for
UFO04785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17283818..17284369 | 51..602 | 100 | <- | Minus |
| X | 17284432..17284477 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:06 Download gff for
UFO04785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17177851..17178402 | 51..602 | 100 | <- | Minus |
| arm_X | 17178465..17178510 | 1..50 | 92 | | Minus |
