UFO04787.5prime Sequence
1109 bp (1008 high quality bases) assembled on 2009-06-30
> UFO04787.5prime
CAGTCGACATGACTGTTACCTGTGAAATTGATTTCGATAACAATCCCCAT
GGCACCTACTTTGGGGGCGAGGTACTCACTGGCAGAGTTACGTTGAAGCT
GGACAAGATGAAGTTGGTAAAAGCCATCACCTTGAATATAACCGGATACG
CAGAGACGCGTTGGATTGAAAGGGTGACCACAAACAGAAGGAGGAGACGT
CGCACATTCTGCGGCCGCGAGGATTACATAGCGTCCAAAACATTTTTGGT
GGGATCCAATCTGAGCAGCCAAGTATCCATTGAAGCGGGAATTCACACTT
ACAACTTCGTGTGCCTGATTCCCACCGAATGTCCTTCGTCCTTCGAGGGA
TCACACGGCAGGGTGCGGTACATGGCAACCGTAACCCTCGTCAGGCCCTG
GAAATTCGATCAGAGCTATACCCGATGCTTTACGGTGCTAAAAGTGATGG
ACTTGAACTTCGATAGTCCACTGCTAAGGGTACCCGCCCACAGTGAAACC
TCGAAGACCTACTGCTGCTGGCCTTGCCGATCAGATCCGTTGGCCCTCCA
ACTGACCGTTCCACAGACAGGATTTGTACCTGGCCAGAATGTTCCCCTTA
GCGTGCTGGTCACAAACGATAGCCACATTCCGGTGGAGCAGCTCCTCATT
AGTTTTGTGATGCTGGTGACATACCACAGTAAGCCACCTTCGATGCCCAA
TACCACGTCCGAGAGGTTGGTGGTAAACACCTTCAAGGGGGACGCTGTGC
AAAGGAACTGCAAGAAGCTATTTAGCTATGAGATCAGAGTCCCGGCCACT
CCGCCCACCTGCTTCAACCTGTGCGGCATCATCCAGATCGCCTACCAAGT
GGAGGTGGAGGCCAGGGTGAAAGGGTTGCCACAACAACGAGGTTGTCACA
TTCCGCTGACATTGCAGTGTCCCTCTTGCACAACACGTACAATCCAGTCT
CGGGGTTTCGTCCCCAGCTGAATGTTATGGACTTGCTGTGAAAAGTAGCC
CTGCTCCAAATTCTTCAAGTCATGGTCTGTCGACCATCATTCCTCCGCCA
ACTATCAGAGGCTGTTCCAATGCGCAGCCGGCTGGCACAGATGATTAAGA
CAATTAACA
UFO04787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18745-RA | 1567 | CG18745-RA | 167..1256 | 9..1084 | 4950 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7784274..7784838 | 1034..479 | 2215 | 96.5 | Minus |
3R | 32079331 | 3R | 7784901..7785116 | 483..268 | 1080 | 100 | Minus |
3R | 32079331 | 3R | 7785173..7785319 | 268..122 | 735 | 100 | Minus |
3R | 32079331 | 3R | 7785839..7785953 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:32:49 has no hits.
UFO04787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:23 Download gff for
UFO04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 167..1258 | 9..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:59 Download gff for
UFO04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 167..1258 | 9..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:37 Download gff for
UFO04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 167..1258 | 9..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:37 Download gff for
UFO04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7784264..7784837 | 480..1042 | 96 | <- | Minus |
3R | 7784905..7785116 | 268..479 | 100 | <- | Minus |
3R | 7785174..7785317 | 124..267 | 100 | <- | Minus |
3R | 7785839..7785953 | 9..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:59 Download gff for
UFO04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3609986..3610559 | 480..1042 | 96 | <- | Minus |
arm_3R | 3610627..3610838 | 268..479 | 100 | <- | Minus |
arm_3R | 3610896..3611039 | 124..267 | 100 | <- | Minus |
arm_3R | 3611561..3611675 | 9..123 | 100 | | Minus |